Jatropha Genome Database

JcCA0080751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080751.10 + phase: 2 /pseudo/partial
         (473 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032937001 assembled CDS                                       661   0.0  
GSVIVT01007840001 assembled CDS                                        66   3e-11

>GSVIVT01032937001 assembled CDS
          Length = 1015

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/456 (73%), Positives = 380/456 (83%), Gaps = 7/456 (1%)

Query: 24  RHRFLSE-------RRCFTMQIQSEGYYLQLGVKDALLNALLVAAKRFSSGPPXXXXXXX 76
            H FLS+        +    +IQ+EGYYLQLG KDALLNALL+AAKRFSSGPP       
Sbjct: 55  HHSFLSDFEVEFFAAQILKRKIQNEGYYLQLGAKDALLNALLLAAKRFSSGPPQLLTQIC 114

Query: 77  XXXXXXXXXXXEHGKPIEQLFYSLRTLQNQDDSNMAVLEMLTVLPEEVVDTQNADGNISP 136
                      EH KPIEQLFYSL+ LQ+QDDSN+AVLEMLTVLPEE+V+ QN D NIS 
Sbjct: 115 LALSALIIRSTEHRKPIEQLFYSLQNLQSQDDSNIAVLEMLTVLPEEIVENQNIDCNISS 174

Query: 137 AHRSQYGQELLSHTPTVLEFLLEQSQKTYDGGIQLHERNRKVLRCLLSWVRAGCFSEIPQ 196
             R QYGQELLSHT  VLEFLL+QS+K++DGGIQLHERNRK+LRCLLSWVRAGCF+EIP 
Sbjct: 175 DRRCQYGQELLSHTTRVLEFLLQQSEKSFDGGIQLHERNRKILRCLLSWVRAGCFAEIPP 234

Query: 197 GSLPTHPLLNFVFNSLQVSSSFDLAIEVLVELASRHEGLPQVLLCRVHFLKEVLLLPALN 256
           G LP HPLLNFV+NSLQVSS+FDLAIEVL+EL  RHEGLPQVLLCR+ FLKEVLLLPALN
Sbjct: 235 GLLPGHPLLNFVYNSLQVSSTFDLAIEVLIELVGRHEGLPQVLLCRIQFLKEVLLLPALN 294

Query: 257 NGDEKIISGLACLMSEIGQAAPSLIVEASVEALALADSLLSCVAFPSEDWEIADSTLQFW 316
           NGDEK+ISGLACLMSEIGQAAPSLIVEAS EA  LAD+LLSCVAFPSEDWEIAD+TLQFW
Sbjct: 295 NGDEKVISGLACLMSEIGQAAPSLIVEASAEAHLLADALLSCVAFPSEDWEIADTTLQFW 354

Query: 317 STLASYILSPDTESSKNGKHVEDVFFSVFSALLDALLLRAQVDESTFNDDSGMLDLPDGL 376
           S+LASYIL  D++S KN K VED+F  VFSALLDA LLRAQVD+STFND+SG LDLPDGL
Sbjct: 355 SSLASYILGLDSDSGKNKKDVEDMFSPVFSALLDAFLLRAQVDDSTFNDESGTLDLPDGL 414

Query: 377 VQFRMNLAELLVDICQLLRPVTFVQKLFFGGWASVNIPVPWKEVEAKLFALNVVSEVVLQ 436
           V FRMNL ELLVDICQLL+  TF+QKLFFGGW S+N+P+PW++VE K+FALNVV+EVVLQ
Sbjct: 415 VHFRMNLVELLVDICQLLKSTTFIQKLFFGGWVSINLPIPWRDVETKMFALNVVAEVVLQ 474

Query: 437 EAQTFDFSVIIQLATMLSIRPSDKLKGFMCIVCQTV 472
           E QTFDFSVI+QL T+LS    DKLKGFM IV +++
Sbjct: 475 EGQTFDFSVIMQLLTILSSMAPDKLKGFMRIVYRSL 510


>GSVIVT01007840001 assembled CDS
          Length = 960

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 155/370 (41%), Gaps = 53/370 (14%)

Query: 114 LEMLTVLPEEVVDTQNADGNISPAHRSQYGQELLSHTPTVLEFLLEQSQKTYDGGIQLHE 173
           LE+L VLPEEV + + A     P  R Q+ +EL S     L  L           + ++E
Sbjct: 145 LELLMVLPEEVFNYKIA---ARPERRRQFEKELTSEMEVALNIL--------TACLNINE 193

Query: 174 RNRKVLRCLLSWVRAGCFSEIPQGSLPTHPLLNFVFNSLQVSSSFDLAIEVLVEL----- 228
              +VL    SW+R      IP   L +HPL+    +SL      + ++ V+ EL     
Sbjct: 194 LKEQVLEAFASWLRLR--HGIPGAVLASHPLVLTALSSLNSELLSEASVNVVSELIHYTT 251

Query: 229 ------ASRHEGLPQVLLCRVHFLKEVLLLPALNNGDEKIISGLACLMSEIGQAAPSLIV 282
                 AS    L QV++ +V  LK  L     ++ DE+ +  +  L +++G +   LI 
Sbjct: 252 AGSSGGASVQIPLIQVIVPQVMNLKVQL---RDSSKDEEDVKAIGRLFADMGDSYVELIA 308

Query: 283 EASVEALALADSLLSCVAFPSEDWEIADSTLQFWSTLASYILSPDT----------ESSK 332
             S E++ +  +LL   + P  +++IA  T  FW  L   +   D           E+ +
Sbjct: 309 TGSDESMLIVHALLEVASHP--EYDIASMTFNFWHNLQVNLTKRDAYLSFGNEASIEAER 366

Query: 333 NGKHVEDVFFSVFSALLDALLLRAQVDESTFNDDSGMLDLPDGLVQFRMNLAELLVDICQ 392
           N +    VF S + +L+  +  R +  E     D    DL D   Q R  +A++L+D   
Sbjct: 367 NRRL--QVFRSSYESLVSLVSSRVRYPEDY--QDLSYEDLKD-FKQTRYAVADVLIDAAS 421

Query: 393 LLRPVTFVQKLFFGGWASV-----NIPVPWKEVEAKLFALNVVSEVVLQEAQTFDFSVII 447
           +L     ++ L+     +V          W+  EA L+ +  +S  V       +  V+ 
Sbjct: 422 VLGGEATLKILYMKLVEAVASCGNEEHNEWRPAEAALYCIRAISNYV----SVVEAEVMP 477

Query: 448 QLATMLSIRP 457
           Q+  ML   P
Sbjct: 478 QVMNMLPKLP 487