Jatropha Genome Database

JcCA0080721.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080721.40 - phase: 2 /pseudo/partial
         (176 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027597001 assembled CDS                                       134   3e-32
GSVIVT01019865001 assembled CDS                                       132   1e-31

>GSVIVT01027597001 assembled CDS
          Length = 348

 Score =  134 bits (336), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 79/113 (69%), Gaps = 4/113 (3%)

Query: 4   VLPVMVMGAFIPGLRRKYPAHEYISAVXXXXXXXXXXXADAKTSPNFSIIGVVMISGALI 63
           VLPVMVMGAFIPGLRRKYPAHEY+SAV           ADA TSPNFS+IGV+M+SGAL+
Sbjct: 120 VLPVMVMGAFIPGLRRKYPAHEYVSAVLLVVGLILFTLADAHTSPNFSVIGVLMVSGALV 179

Query: 64  MDSFLGNLQEAIFTMNPETTQFLFTDGDAVLFKRSGFAFLDPSHAFDRRVIQS 116
           MDSFLGNLQEAIFT+NP+TTQ        V+    G  FL P   F   + ++
Sbjct: 180 MDSFLGNLQEAIFTLNPDTTQMEMLFCSTVI----GLPFLIPPMLFTGELFKA 228


>GSVIVT01019865001 assembled CDS
          Length = 350

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 68/81 (83%)

Query: 4   VLPVMVMGAFIPGLRRKYPAHEYISAVXXXXXXXXXXXADAKTSPNFSIIGVVMISGALI 63
           VLPVM+MGAFIPGLRRKYP HEY+SAV           ADA+TSPNFS IGV+MISGAL+
Sbjct: 120 VLPVMIMGAFIPGLRRKYPFHEYVSAVLLVVGLILFTLADAQTSPNFSSIGVLMISGALV 179

Query: 64  MDSFLGNLQEAIFTMNPETTQ 84
           MDSFLGNLQEAIFTMNPETTQ
Sbjct: 180 MDSFLGNLQEAIFTMNPETTQ 200