Jatropha Genome Database

JcCA0080721.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080721.30 - phase: 0 /pseudo/partial
         (110 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027596001 assembled CDS                                        65   5e-12

>GSVIVT01027596001 assembled CDS
          Length = 264

 Score = 65.5 bits (158), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 1   MGPGDFVSSSTEKDTAVKERAVTESEVANNCRRQ-SALIKKYHSLGMDIKDAT 52
           MG GDFVSS TEKD AV ER VTE EVAN    Q + LI+ Y +LGMD+ DAT
Sbjct: 84  MGFGDFVSSGTEKDAAVMERVVTEWEVANQGGPQKTQLIRHYQALGMDLHDAT 136