Jatropha Genome Database

JcCA0080721.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080721.20 + phase: 0 
         (575 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026363001 assembled CDS                                       802   0.0  
GSVIVT01003217001 assembled CDS                                        59   5e-09
GSVIVT01029207001 assembled CDS                                        50   4e-06

>GSVIVT01026363001 assembled CDS
          Length = 565

 Score =  802 bits (2072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/579 (69%), Positives = 468/579 (80%), Gaps = 18/579 (3%)

Query: 1   MAVEEEAKLEGFLQWLQANKVELRGCSIKFCGPDKGFGVFSSKDVSDGVLLVVPLDLAIT 60
           MA  EEAKL+ FLQWLQ N+VELRGC IK+C  +KGFG+F + D SDG+ LVVPLDLAIT
Sbjct: 1   MASTEEAKLQHFLQWLQLNRVELRGCEIKYCDSNKGFGIFYANDASDGIPLVVPLDLAIT 60

Query: 61  PMRVLQDPLIGPECRAMYEEGEVDDRFLMILFLMLERLRKNSSWKPYLDMLPSTFGNPLW 120
           PMRVLQDP +GPECRAM+EEGEVDDR LMILFL +ERLRKNSSWKPYLDMLP+TFG PLW
Sbjct: 61  PMRVLQDPFLGPECRAMFEEGEVDDRLLMILFLTVERLRKNSSWKPYLDMLPTTFGTPLW 120

Query: 121 FTDDELLELKGTTLYRATQLQKKNLLSLYDDKVKGLMKKLLILDGDSEGEVCFEDFLWAN 180
           F DDE +ELKGT+++RAT+LQKK L SLYDDKVK L+KKLLILDGDS+GEV FEDFLWAN
Sbjct: 121 FIDDEFIELKGTSVHRATELQKKQLQSLYDDKVKDLVKKLLILDGDSKGEVHFEDFLWAN 180

Query: 181 SLFWSRALNIPLPQSYVFPQIQEDQAINCSAN---NSESSHNDNSCEDLLNEKDEKRIKV 237
           S+FW+RALNIPLP+SYVFPQIQE+Q  +C  N   +S +  +  S  +L++  DEK   V
Sbjct: 181 SIFWTRALNIPLPRSYVFPQIQEEQN-SCIPNIIKDSGAFTDQISSGNLVSGMDEKSTDV 239

Query: 238 PGVDNQVSGAISTPVQGDTLWVEGLVPGIDFCNHATNLKAAATWEVDGTGLVTGIPFSMY 297
            G ++QV+   S+ +Q + LWVEGLVPGIDFCNH  +LKAAATWEVD TGL TG+P SMY
Sbjct: 240 HGFESQVNRGTSSSMQEEILWVEGLVPGIDFCNH--DLKAAATWEVDNTGLKTGVPLSMY 297

Query: 298 LLSAQQTAFQIGKEISISYGNKGNEELLYLYGFVIENNPDDYLMVHYPAEAIQDVPFSDS 357
           LLS +Q+   + KEISISYGNKGNEELLYLYGFVI+NNPDDYLMVHYP E  ++VPFS+S
Sbjct: 298 LLSVEQSPCHMQKEISISYGNKGNEELLYLYGFVIDNNPDDYLMVHYPMELFKNVPFSES 357

Query: 358 KMQLLEAQKGELRCLLPKSLLDHGFFPVGTPNNDNNGKCKNDPVCNFSWSGQRKTPSYIN 417
           K QLLEAQK E+RCLL K+LLD GFFP  T  N+ NGK  +  VCN+SWSGQRKTPSY+N
Sbjct: 358 KGQLLEAQKAEMRCLLHKTLLDRGFFPASTLKNEQNGKSTDHQVCNYSWSGQRKTPSYLN 417

Query: 418 KLVFPDDFLTSLRTIAMQEDELYKVSSMLEELVGSDGERQPTDTEVRAAIWEACGDSGAL 477
           KLVFP+ FLT+LRTI+M+EDEL +VSS+LEEL  S G RQP D+E RAA+WEACGDSGAL
Sbjct: 418 KLVFPEAFLTALRTISMEEDELSRVSSLLEELAESGG-RQPLDSETRAAVWEACGDSGAL 476

Query: 478 QLLVDLLQAKMVDLEENSRTEECDSELLERAQHVQNPE-HQGRYESNLRRAEIGGLNELE 536
           Q+LVDLL  KM+DLEE S TE+ D+ELLE+A   + PE H    +S +            
Sbjct: 477 QVLVDLLNVKMMDLEEGSGTEDNDTELLEKALMTEIPEQHTSGTDSCIPHK--------- 527

Query: 537 LMSRNKWASIVYRRGQKVLTRLFLKEAEHALQLSLSEGN 575
            MSRN+W+SIVYRRGQK LTRLFLKEAEHALQLSLSEGN
Sbjct: 528 -MSRNRWSSIVYRRGQKQLTRLFLKEAEHALQLSLSEGN 565


>GSVIVT01003217001 assembled CDS
          Length = 484

 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 11/182 (6%)

Query: 9   LEGFLQWLQANKVELRGCSIKFCGPDKGFGVFSSKDVS-DGVLLVVPLDLAITPMRVLQD 67
           ++ F +WL    V      +K     +G G+ + +D++ +  +L VP    I P  V   
Sbjct: 51  VQTFWKWLFDQGVVSGKTPVKPGIVPEGLGLVAQRDIARNEAVLEVPKRFWINPDAVAAS 110

Query: 68  PLIGPECRAMYEEGEVDDRFLMILFLMLERLRKNSSWKPYLDMLPSTFGNPLWFTDDELL 127
             IG  C      G +     + LFL+ E+LR  S W+ YLD+LP    + ++++++EL+
Sbjct: 111 E-IGSVC------GGLKPWVSVALFLIREKLRDESPWRSYLDILPEYTNSTIYWSEEELV 163

Query: 128 ELKGTTLYRATQLQKKNLLSLYDDKVKGLMKKLLILDGDSEGEVCFEDFLWANSLFWSRA 187
           E++GT L   T   K+ + S +   +K   + +L         V  +DFLWA  +  SRA
Sbjct: 164 EIQGTQLSNTTLGVKEYVQSEF---LKVEEEVILPHSQLFPFPVTLDDFLWAFGILRSRA 220

Query: 188 LN 189
            +
Sbjct: 221 FS 222


>GSVIVT01029207001 assembled CDS
          Length = 583

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 14/192 (7%)

Query: 1   MAVEEEAKLEGFLQWLQANKVELRGCSIKFCGPDKGFGVFSSKDVSDG-VLLVVPLDLAI 59
           +++E+E   E  LQW + N V  +   I +     G G  +++D+  G V L +P+ + I
Sbjct: 176 LSIEKE---ECILQWGERNDVRTK-LKIAYV-EGAGRGAIATEDLKVGDVALEIPMSIVI 230

Query: 60  TPMRVLQDPLIGPECRAMYEEGEVDDRFLMILFLMLERLRKNSSWKPYLDMLPSTFGNPL 119
           +   V +  +       + +   +    +++L+ M E+   NS +  Y + LP  F   L
Sbjct: 231 SEELVHESDMFP----ILEKIDGISSETMLLLWSMKEKHNSNSKFNTYFNALPEAFNTGL 286

Query: 120 WFTDDELLELKGTTLYRATQLQKKNLLSLYDDKVKGLMKKLL-ILDGDSEGEVCFEDFLW 178
            F  D ++ L GT L       KK+L + Y++ V  L K    I   +   +   E FLW
Sbjct: 287 SFEFDAIMVLAGTLLLEEIIEAKKHLNAQYEELVPALCKDHPDIFPPEFYTQ---EQFLW 343

Query: 179 ANSLFWSRALNI 190
           A  L++S  + +
Sbjct: 344 ACELWYSNGMQV 355