Jatropha Genome Database

JcCA0080621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080621.10 + phase: 0 /partial
         (268 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010968001 assembled CDS                                       295   2e-80

>GSVIVT01010968001 assembled CDS
          Length = 520

 Score =  295 bits (755), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 156/261 (59%), Positives = 184/261 (70%), Gaps = 34/261 (13%)

Query: 4   GGSILGIKFLDPLAGLVVSGMILKAGLEIGYQSVFELVDAAIPAEDLDPVRQTILQVEGV 63
           GGSILG+KFLDPLAGLVVSGMILKAGL  GYQSV ELVDAA+P + LDP+++TILQV+GV
Sbjct: 272 GGSILGVKFLDPLAGLVVSGMILKAGLGTGYQSVMELVDAAVPVQQLDPIKETILQVDGV 331

Query: 64  KGCHRLRGRRAGSSLHLDVHIEVDPFSSVSAAHGIGEKVRQEIHKCHPGIAEVFIHIG-- 121
           KGCHRLRGRRAGSSL+LDVHIEVDPFSSVSAAH +GE VR +IHK HPG++EVFIHI   
Sbjct: 332 KGCHRLRGRRAGSSLYLDVHIEVDPFSSVSAAHNVGENVRHQIHKSHPGVSEVFIHIDPA 391

Query: 122 ---FSPCEIDLHNNVEETANENRNVSLEDRDIEMIVSNVFQSKFPERMEVERITRHCLQS 178
               SP  ++   N++E   + RNVS E   +E IVSNV  SKF E+M VERIT+H LQ 
Sbjct: 392 ISQISPSIMEQQENLKEMNYQKRNVSSEHNGVE-IVSNVLSSKFSEKMVVERITQHLLQG 450

Query: 179 KMLVEIEVSMPPEILIRYIIQPAHDVCYCSMQHLPLLHACVITNRDAKEVANAAEKEILK 238
           K L+++EVSMPP ILIR                            DA  VA  AE+EILK
Sbjct: 451 KTLLQVEVSMPPHILIR----------------------------DAMRVAEEAEEEILK 482

Query: 239 AASNIMTVRIQLRLGHPFPKF 259
            AS+++ V I LRLG P P+ 
Sbjct: 483 VASDVIRVSILLRLGQPIPEL 503