Jatropha Genome Database

JcCA0080591.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080591.30 - phase: 0 
         (267 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012117001 assembled CDS                                       103   7e-23
GSVIVT01019165001 assembled CDS                                        82   2e-16

>GSVIVT01012117001 assembled CDS
          Length = 1638

 Score =  103 bits (258), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 49/82 (59%), Positives = 62/82 (75%), Gaps = 3/82 (3%)

Query: 101  NLMMKMSNASR---KDQGMVDVWLEEELDFLWIGVRRHGQGNWEAMLRDPSLSFSKHKTI 157
            N+MM+  + S    K +  V+ W E+ELDFLWIGVRRHG+GNW+AMLRDP L FSK+KT 
Sbjct: 1182 NIMMRTGSGSMNLFKKKSRVEGWSEDELDFLWIGVRRHGRGNWDAMLRDPRLKFSKYKTA 1241

Query: 158  EDLSRRWEKERLKILYPGNLPI 179
            +DLS RWE+E+LKIL    LP+
Sbjct: 1242 DDLSARWEEEQLKILEGPALPM 1263


>GSVIVT01019165001 assembled CDS
          Length = 600

 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 46/65 (70%)

Query: 108 NASRKDQGMVDVWLEEELDFLWIGVRRHGQGNWEAMLRDPSLSFSKHKTIEDLSRRWEKE 167
           + S K +    +W EEELDFLWIGVRRHG+ NW+AMLRDP L FS  +   DL+ +WE E
Sbjct: 287 SCSDKFEQHTTLWPEEELDFLWIGVRRHGRDNWDAMLRDPKLHFSPWRVASDLAEQWEVE 346

Query: 168 RLKIL 172
           + K+L
Sbjct: 347 QSKLL 351