Jatropha Genome Database

JcCA0080591.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080591.20 + phase: 0 
         (440 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020400001 assembled CDS                                       604   e-173

>GSVIVT01020400001 assembled CDS
          Length = 422

 Score =  604 bits (1557), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 291/440 (66%), Positives = 353/440 (80%), Gaps = 18/440 (4%)

Query: 1   MGISFKYWDECVEPQDMEAMWREPEVLTEWLDAGETKGQKVHLSRDPDGQPYLTQTEMKA 60
           M +S+KYWD+CV+P+D+EA+W +P+V TEWLD GET+G+KVHLSRDPDG+PYLTQ EMKA
Sbjct: 1   MALSYKYWDDCVDPRDLEALWLDPDVSTEWLDVGETRGRKVHLSRDPDGEPYLTQIEMKA 60

Query: 61  VAEIIVRRHFDSQILPAMLCAIAELASDRQLLATRYDKKTKQTTVGIMQLLPATMEWLIR 120
           VA I+V RHFDSQI   M+CAI+E+ SDRQ LA +YDKK K TT+GIMQLLP T +WL+R
Sbjct: 61  VAAIVVSRHFDSQIDLEMICAISEIESDRQPLAEQYDKKAKDTTLGIMQLLPKTADWLVR 120

Query: 121 DLGYRVYKGEGNPDILYRPFVSVYFGAAYLQWLSNFERQERSEEFVVRAYKGGIEKANHK 180
           +LGYR Y+ EGNP +L+RPF++VY GAAYL+WLSN++ +ERSEEFVVRAYKGG +KA HK
Sbjct: 121 ELGYRTYEVEGNPILLFRPFINVYLGAAYLKWLSNYDGKERSEEFVVRAYKGGPKKAAHK 180

Query: 181 STLQHWKRYLSVKESLPSRRFVDDGPSVDNXXXXXXXXXXXXXXXXXXXXXXQKTGGDYV 240
           STL++WKRYLSVKESLP R+ + DGP  ++                         G ++ 
Sbjct: 181 STLEYWKRYLSVKESLPFRKSLYDGPYPNDASGSGAPVSVI-------------KGVNHT 227

Query: 241 YWDSRASPEDMQEMWNNSDVAREWIKSGEKRGKVRFSLDKDKRLYLSRVEVKIDLIQAVA 300
           +WDSRASPEDM EMWN+ DV +EW K GE RGKV FS DK+KR YLSRVEVK     AVA
Sbjct: 228 FWDSRASPEDMDEMWNHPDVLKEWSKCGEIRGKVLFSHDKEKRPYLSRVEVK-----AVA 282

Query: 301 QTILSKHFSTRGVKPSVLCALAEMVSFRFVNGVGPQIGLMGIDYSTAFWLYMELGYRAYR 360
           + ILSKHFSTR VK ++LCALAE+VS RFVNGVG + G+MGIDY TA WLY +LGY+AYR
Sbjct: 283 EIILSKHFSTRQVKSTILCALAEIVSMRFVNGVGARTGIMGIDYPTAMWLYRDLGYKAYR 342

Query: 361 VDSVDDLTKPFVSMYFGAAYLAYLSEYEGRERTPQFVVQAYLAGPKNVNLQETGPFWLKF 420
           V++VDDLTKPF+SMYFGAAYLA+LSEYEGR+RTPQF+VQAYLAGPKNVNLQETG  WL F
Sbjct: 343 VEAVDDLTKPFISMYFGAAYLAWLSEYEGRQRTPQFIVQAYLAGPKNVNLQETGHHWLNF 402

Query: 421 EEALSNYEDIKKDPGSCTIL 440
           E+A++ YE  KK+ G C+IL
Sbjct: 403 EKAVTYYEPKKKEDGGCSIL 422