Jatropha Genome Database

JcCA0080591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080591.10 - phase: 0 
         (243 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036751001 assembled CDS                                       320   5e-88
GSVIVT01001842001 assembled CDS                                       216   1e-56
GSVIVT01007521001 assembled CDS                                       214   3e-56
GSVIVT01010328001 assembled CDS                                       211   3e-55
GSVIVT01013403001 assembled CDS                                       141   3e-34
GSVIVT01032942001 assembled CDS                                       136   1e-32
GSVIVT01001128001 assembled CDS                                        61   5e-10

>GSVIVT01036751001 assembled CDS
          Length = 429

 Score =  320 bits (819), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 153/210 (72%), Positives = 171/210 (81%)

Query: 34  LKSSKSIFXXXXXXXXXXXQACCTRSFQPIKATATEMPPTILKSRNDGKTKIGINGFGRI 93
           LK   +IF           Q C  RS QPIKATATE+PPT+ KS + G+TKIGINGFGRI
Sbjct: 45  LKVQTTIFGTPCIGNSSSLQKCSARSLQPIKATATELPPTVQKSWSSGQTKIGINGFGRI 104

Query: 94  GRLVMRIATFRDDIDVVAVNDPFIDTKYMAYMFKYDSTHGGYKGSIKVLDESTLEINGKQ 153
           GRLV+R+AT RDDIDVVAVNDPF+D KYMAYMFKYDSTHG +KG+IKVLDESTLEINGKQ
Sbjct: 105 GRLVLRVATSRDDIDVVAVNDPFVDAKYMAYMFKYDSTHGVFKGTIKVLDESTLEINGKQ 164

Query: 154 IKVSSKRDPAEIPWGDYGAEYVVESSGVFTTIDXXXXXXXXXXXXVVISAPSADAPMFVV 213
           IKV+SKRDP+EIPWGDYG +YVVESSGVFTT +            VVISAPSADAPMFVV
Sbjct: 165 IKVTSKRDPSEIPWGDYGIDYVVESSGVFTTTEKASAHIKGGAKKVVISAPSADAPMFVV 224

Query: 214 GVNEKTYKPNMDVVSNASCTTNCLAPLAKV 243
           GVNE +YKP+M++VSNASCTTNCLAPLAKV
Sbjct: 225 GVNETSYKPSMNIVSNASCTTNCLAPLAKV 254


>GSVIVT01001842001 assembled CDS
          Length = 337

 Score =  216 bits (549), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/163 (64%), Positives = 122/163 (74%), Gaps = 1/163 (0%)

Query: 82  KTKIGINGFGRIGRLVMRIATFRDDIDVVAVNDPFIDTKYMAYMFKYDSTHGGYKGS-IK 140
           K KIGINGFGRIGRLV R+A  RDD+++VAVNDPFI+T YM YMFKYDS HG +K   IK
Sbjct: 3   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFINTDYMTYMFKYDSVHGQWKHHDIK 62

Query: 141 VLDESTLEINGKQIKVSSKRDPAEIPWGDYGAEYVVESSGVFTTIDXXXXXXXXXXXXVV 200
           V D  TL    K + V   ++P EIPWG+ GAEYVVES+GVFT  D            V+
Sbjct: 63  VKDSKTLLFGDKAVTVFGAKNPEEIPWGEAGAEYVVESTGVFTDKDKAALHLKGGAKKVI 122

Query: 201 ISAPSADAPMFVVGVNEKTYKPNMDVVSNASCTTNCLAPLAKV 243
           ISAPS++APMFV+GVNEK YK N+D+VSNASCTTNCLAPLAKV
Sbjct: 123 ISAPSSNAPMFVMGVNEKEYKSNIDIVSNASCTTNCLAPLAKV 165


>GSVIVT01007521001 assembled CDS
          Length = 343

 Score =  214 bits (546), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 106/163 (65%), Positives = 120/163 (73%), Gaps = 1/163 (0%)

Query: 82  KTKIGINGFGRIGRLVMRIATFRDDIDVVAVNDPFIDTKYMAYMFKYDSTHGGYKG-SIK 140
           K KIGINGFGRIGRLV R+A  RDD+++VAVNDPFI T YM YMFKYDS HG +K   +K
Sbjct: 9   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 68

Query: 141 VLDESTLEINGKQIKVSSKRDPAEIPWGDYGAEYVVESSGVFTTIDXXXXXXXXXXXXVV 200
           V D +TL    K + V   R+P EIPWG+ GAE+VVES+GVFT  D            VV
Sbjct: 69  VKDSNTLLFGEKPVTVFGIRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKKVV 128

Query: 201 ISAPSADAPMFVVGVNEKTYKPNMDVVSNASCTTNCLAPLAKV 243
           ISAPS DAPMFVVGVNEK YKP + +VSNASCTTNCLAPLAKV
Sbjct: 129 ISAPSKDAPMFVVGVNEKEYKPELHIVSNASCTTNCLAPLAKV 171


>GSVIVT01010328001 assembled CDS
          Length = 380

 Score =  211 bits (537), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/166 (62%), Positives = 121/166 (72%), Gaps = 1/166 (0%)

Query: 79  NDGKTKIGINGFGRIGRLVMRIATFRDDIDVVAVNDPFIDTKYMAYMFKYDSTHGGYKGS 138
           +D K KIGINGFGRIGRLV R+A   +D+++VAVNDPFI T YM YMFKYDS HG +K  
Sbjct: 44  SDKKIKIGINGFGRIGRLVARVALQSNDVELVAVNDPFITTDYMTYMFKYDSVHGHWKHH 103

Query: 139 -IKVLDESTLEINGKQIKVSSKRDPAEIPWGDYGAEYVVESSGVFTTIDXXXXXXXXXXX 197
            +KV D  TL    K + V   R+P EIPW + GA+YVVES+GVFT  D           
Sbjct: 104 DVKVKDSKTLLFGEKSVTVFGVRNPEEIPWAETGADYVVESTGVFTDKDKAAAHLKGGAK 163

Query: 198 XVVISAPSADAPMFVVGVNEKTYKPNMDVVSNASCTTNCLAPLAKV 243
            V+ISAPS DAPMFV+GVNEK YKP++D+VSNASCTTNCLAPLAKV
Sbjct: 164 KVIISAPSKDAPMFVMGVNEKEYKPDIDIVSNASCTTNCLAPLAKV 209


>GSVIVT01013403001 assembled CDS
          Length = 453

 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 105/177 (59%), Gaps = 6/177 (3%)

Query: 72  PTILKSRNDGKTKIGINGFGRIGRLVMRIATFRDD--IDVVAVNDPFIDTKYMAYMFKYD 129
           P  ++     K K+ INGFGRIGR  +R    R D  +DV+ VND     K  +++ KYD
Sbjct: 76  PAPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIVVNDSG-GVKNASHLLKYD 134

Query: 130 STHGGYKGSIKVLDESTLEINGKQIKVSSKRDPAEIPWGDYGAEYVVESSGVFTTIDXXX 189
           S  G +K  +K++D  T+ ++GK IKV S RDP ++PW + G + V+E +GVF       
Sbjct: 135 SMLGTFKAEVKIVDNETISVDGKPIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAG 194

Query: 190 XXXXXXXXXVVISAPS--ADAPMFVVGVNEKTYKPNM-DVVSNASCTTNCLAPLAKV 243
                    V+I+AP+  AD P +VVGVNE  Y   + ++VSNASCTTNCLAP  K+
Sbjct: 195 KHIQAGAKKVIITAPAKGADIPTYVVGVNEGDYSHEVSNIVSNASCTTNCLAPFVKI 251


>GSVIVT01032942001 assembled CDS
          Length = 289

 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 4/171 (2%)

Query: 76  KSRNDGKTKIGINGFGRIGRLVMRIATFRDD--IDVVAVNDPFIDTKYMAYMFKYDSTHG 133
           K   + K K+ INGFGRIGR  +R    R D  +DV+ VND     K  +++ KYDS  G
Sbjct: 63  KGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIVVNDTG-GVKQASHLLKYDSILG 121

Query: 134 GYKGSIKVLDESTLEINGKQIKVSSKRDPAEIPWGDYGAEYVVESSGVFTTIDXXXXXXX 193
            ++  +K + +  + ++GK IK+ S R+P ++PWGD   + V+E +GVF   D       
Sbjct: 122 TFEADVKAVGDDAISVDGKVIKIVSSRNPLDLPWGDLDIDLVIEGTGVFVDRDGAGKHIQ 181

Query: 194 XXXXXVVISAPS-ADAPMFVVGVNEKTYKPNMDVVSNASCTTNCLAPLAKV 243
                V+I+AP   D P +VVGVN   Y  +  ++SNASCTTNCLAP  KV
Sbjct: 182 AGAKKVLITAPGKGDIPTYVVGVNADEYNHDESIISNASCTTNCLAPFVKV 232


>GSVIVT01001128001 assembled CDS
          Length = 331

 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 68/165 (41%), Gaps = 65/165 (39%)

Query: 80  DGKTKIGINGFGRIGRLVMRIATFRDDIDVVAVNDPFIDTKYMAYMFKYDSTHGGYKGSI 139
           + K K+ INGFGRIGR  +                    T Y+A + +  S  G      
Sbjct: 72  EAKLKVAINGFGRIGRNFLST------------------TPYLASLRQKLSLWG------ 107

Query: 140 KVLDESTLEINGKQIKVSSKRDPAEIPWGDYGAEYVVESSGVFTTIDXXXXXXXXXXXXV 199
           +V  +   E  GK I+  +K+                                      V
Sbjct: 108 RVFVDR--EGAGKHIEAGAKK--------------------------------------V 127

Query: 200 VISAPS-ADAPMFVVGVNEKTYKPNMDVVSNASCTTNCLAPLAKV 243
           +I+AP  AD P +VVGVN +TY P   ++SNASCTTNCLAP  K+
Sbjct: 128 LITAPGKADIPTYVVGVNAETYNPAEPIISNASCTTNCLAPFVKI 172