Jatropha Genome Database

JcCA0080571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080571.10 + phase: 0 /partial
         (112 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011287001 assembled CDS                                       171   9e-44

>GSVIVT01011287001 assembled CDS
          Length = 422

 Score =  171 bits (432), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 84/115 (73%), Positives = 94/115 (81%), Gaps = 3/115 (2%)

Query: 1   VAYTFDAGPNAVLIAQNRKTAAXXXXXXXXXXPPNSDTDLNSYVIGDKSILKDAGIQEIK 60
           VAYTFDAGPNAVLIA++RK AA          PP+SDTDLNSYVIGDKSIL D G++E+K
Sbjct: 308 VAYTFDAGPNAVLIARDRKVAANLLQRLLYYFPPHSDTDLNSYVIGDKSILGDVGVEEMK 367

Query: 61  DVEALPPPPEIKD---ASRYKGDVSYFICTRPGRGPVLLSDESHALLNPETGLPK 112
           DVEALPPPPE KD   A + +G VSYFICTRPG+GPVLLSDES ALLNPE+GLPK
Sbjct: 368 DVEALPPPPETKDQIPAQKQRGAVSYFICTRPGKGPVLLSDESQALLNPESGLPK 422