Jatropha Genome Database

JcCA0080501.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080501.40 - phase: 0 
         (231 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016243001 assembled CDS                                       235   1e-62

>GSVIVT01016243001 assembled CDS
          Length = 220

 Score =  235 bits (600), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 112/204 (54%), Positives = 140/204 (68%), Gaps = 34/204 (16%)

Query: 26  TPVGHPLFSRIRLATPADVPHIHKLIHQMAVFERLTHLFSATESSLSATLFTSPPFHSFT 85
            P+G+P+F+RIR+A  +DVPH+HKL++Q A  +RLTH+FSATESSLSATLF SPPF SFT
Sbjct: 49  APIGNPIFARIRIANSSDVPHLHKLMYQHAASQRLTHIFSATESSLSATLFNSPPFQSFT 108

Query: 86  IFLLEVSSNPLPKITSHFAPIDRIIQLDHPINDPETETFKNGSDDVVVAGFVLFFPNYST 145
           + LLE                                 F +G + VVV GFVLFFPNY  
Sbjct: 109 VLLLE---------------------------------FGSGGEAVVV-GFVLFFPNYGV 134

Query: 146 FLGKPGFYVEDLFVRECYRRKGLGRMLLSAVAGQAVKMGYGRVEWVVLDWNVNAIKFYEE 205
           FLGKPGFY+E L+ RECYR+KG G+MLLSAVA QAVKMGYG+++W VL WN NA  FY++
Sbjct: 135 FLGKPGFYIESLYTRECYRKKGFGKMLLSAVAAQAVKMGYGKLDWCVLGWNANAFGFYKK 194

Query: 206 MGAKVLPEWRICRLTGENLEAYRD 229
           MGA+V  E ++CRLT + L+AY  
Sbjct: 195 MGAQVFEELKMCRLTSDALQAYES 218