Jatropha Genome Database

JcCA0080501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080501.10 + phase: 0 /partial
         (85 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016242001 assembled CDS                                       127   1e-30

>GSVIVT01016242001 assembled CDS
          Length = 589

 Score =  127 bits (319), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/62 (87%), Positives = 58/62 (93%)

Query: 1   MIFTCKVCETRSIKTACRDSYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARG 60
           MIFTCKVCETRS+KTACR+SYE+GVVV RC GC+NLHLIAD LGWFGEPGSIEDFL ARG
Sbjct: 110 MIFTCKVCETRSVKTACRESYERGVVVVRCDGCSNLHLIADRLGWFGEPGSIEDFLDARG 169

Query: 61  EE 62
           EE
Sbjct: 170 EE 171