Jatropha Genome Database

JcCA0080281.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080281.30 - phase: 0 
         (92 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030190001 assembled CDS                                        53   3e-08
GSVIVT01024563001 assembled CDS                                        50   2e-07
GSVIVT01021772001 assembled CDS                                        49   4e-07

>GSVIVT01030190001 assembled CDS
          Length = 139

 Score = 52.8 bits (125), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 3   MPGEAVDCGQVNSALAPCIPFLTGADTAPSAACCGGIKNLKALAPXXXXXXXXXXCVKAA 62
           M  E + CG V + LAPCI +L  A   P  ACC G+KNLK  A           C+  A
Sbjct: 44  MAVEGLSCGDVATQLAPCINYLRSAGPLP-PACCNGVKNLKNSAATTQDRRTACKCLINA 102

Query: 63  ASHYPNINEDSASSFPKKCGVEVNIPIS 90
           +     +N   A+  P KCGV +   IS
Sbjct: 103 SKSISGVNFGLAAGLPGKCGVNIPYKIS 130


>GSVIVT01024563001 assembled CDS
          Length = 119

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 8   VDCGQVNSALAPCIPFLTGADTAPSAACCGGIKNLKALAPXXXXXXXXXXCVKAAASHYP 67
           V C QV   L PC+ +L      PS+ CC G+K +KA +           C++  A+  P
Sbjct: 29  VTCSQVTQLLNPCVNYLIYGGAIPSS-CCAGVKQVKAASKTGEDRRTACSCIQDGAAMIP 87

Query: 68  NINEDSASSFPKKCGVEVNIPIS 90
            I+ +  +S P +CGV +   IS
Sbjct: 88  GIDYNLVASLPSQCGVSLPYKIS 110


>GSVIVT01021772001 assembled CDS
          Length = 129

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 37/86 (43%)

Query: 5   GEAVDCGQVNSALAPCIPFLTGADTAPSAACCGGIKNLKALAPXXXXXXXXXXCVKAAAS 64
           G  V CG V+   A C+ + TG    PS ACC G++ L A             C+K    
Sbjct: 23  GATVPCGTVDMKAAACVGYATGKQPKPSPACCSGLQQLAATVKTVDDKKNICRCLKNGVK 82

Query: 65  HYPNINEDSASSFPKKCGVEVNIPIS 90
            +  + +   S  P  C ++V  P+S
Sbjct: 83  AFAGVQDRLLSQIPTACNIKVGFPVS 108