Jatropha Genome Database

JcCA0080281.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080281.20 + phase: 0 
         (322 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018268001 assembled CDS                                       479   e-135

>GSVIVT01018268001 assembled CDS
          Length = 322

 Score =  479 bits (1232), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 230/322 (71%), Positives = 269/322 (83%)

Query: 1   MDCWKGILKVPVDPTSRSYCRVAVSLCLSPSSKSLTVPSANAIFFSGDRVEGTENPVIER 60
           MD W G+LKVP+ P+SR   RVA SLCLSP+SK+L VPSANAIFF+GDRV+GT N VIER
Sbjct: 1   MDRWSGVLKVPLHPSSRVLYRVAASLCLSPTSKTLIVPSANAIFFNGDRVQGTGNSVIER 60

Query: 61  LSDLQKIAEILVSKFGGSVNAWVIEASSFNGPFAVYKDFIPSVNCWGEPKSYSPAGFPAS 120
           LS++++IAEILVSKFGGSVNAWV+EAS+FNGPFAVYKDFIPSVN WG+PKSYSP+GFPAS
Sbjct: 61  LSNIEQIAEILVSKFGGSVNAWVVEASTFNGPFAVYKDFIPSVNQWGDPKSYSPSGFPAS 120

Query: 121 TSTISLLSNCIREAKKVISTKEKDPISASASSASFYEPKTYILGFSKGGIVLNQLVAELS 180
           TST+SLLSNC+ EAKK IS ++K+P     S++  Y+PKT+ILGFSKGG VLNQLV EL 
Sbjct: 121 TSTVSLLSNCLEEAKKAISGRQKEPCPLGLSASCSYQPKTFILGFSKGGTVLNQLVTELG 180

Query: 181 VSEVKLNSKEQHMNRKCSQEDIQIIPRSKESLLNSITEIHYVDVGLNSAGAYITDHNVIE 240
            S+V       H+     QE+ QI+P S ESLLNSI EIHYVDVGLNSAGAYITD +VI 
Sbjct: 181 FSKVASIRSSPHIKESDVQEEYQILPTSIESLLNSIAEIHYVDVGLNSAGAYITDQDVIY 240

Query: 241 RISKRLTQGAPGIRFVLHGTPRQWCDSRRVLIRNEKDKLVHLLQSEARRSGGKLKVCEKF 300
           RISKR+ +G  GIRFV+HGTPRQW D RRV IRNEKDKLVHLL+SEA  S GKL+VCE+F
Sbjct: 241 RISKRVAEGGGGIRFVVHGTPRQWRDKRRVWIRNEKDKLVHLLESEAEHSEGKLRVCERF 300

Query: 301 YFADRPPDLQMHFEIIQSMDVS 322
           YFADRP +LQMHFEII+++DVS
Sbjct: 301 YFADRPSNLQMHFEIIENLDVS 322