Jatropha Genome Database

JcCA0080281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080281.10 - phase: 0 /pseudo
         (169 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018265001 assembled CDS                                       157   3e-39
GSVIVT01032599001 assembled CDS                                       145   9e-36
GSVIVT01008074001 assembled CDS                                       144   2e-35
GSVIVT01001052001 assembled CDS                                       135   9e-33
GSVIVT01035525001 assembled CDS                                       132   1e-31
GSVIVT01029244001 assembled CDS                                       130   2e-31
GSVIVT01016862001 assembled CDS                                       122   8e-29
GSVIVT01016652001 assembled CDS                                       115   7e-27
GSVIVT01019734001 assembled CDS                                       110   2e-25
GSVIVT01007148001 assembled CDS                                        99   7e-22

>GSVIVT01018265001 assembled CDS
          Length = 958

 Score =  157 bits (396), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/119 (62%), Positives = 87/119 (73%), Gaps = 1/119 (0%)

Query: 1   MVDESVALD-AVIKEAVDLENIPLEEVFDHLKCTKNGLSSDAVQERLDLFGHNXXXXXXX 59
           M ++S+ALD A+ KEAVDLENIPLEEVF+HLKCT+ GLS +A Q+RLDLFG+N       
Sbjct: 1   MDEKSIALDEAINKEAVDLENIPLEEVFEHLKCTREGLSHEAFQQRLDLFGYNKLEEIKE 60

Query: 60  XXXXXXXGFMWNPLSWVMEXXXXXXXXXXHGGGKSPDYHDFVGIVILLVINSTISFIEE 118
                  GFMWNPLSWVME          HGGGK  DYHDFVGI+ILL++NSTISF+EE
Sbjct: 61  NKILKFLGFMWNPLSWVMEAAAVMAIALAHGGGKPTDYHDFVGIIILLIVNSTISFVEE 119


>GSVIVT01032599001 assembled CDS
          Length = 955

 Score =  145 bits (366), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 68/118 (57%), Positives = 80/118 (67%)

Query: 1   MVDESVALDAVIKEAVDLENIPLEEVFDHLKCTKNGLSSDAVQERLDLFGHNXXXXXXXX 60
           M D+   L+AV+KEAVDLENIP+EEVF +L+C  NGLS++A  ERL +FGHN        
Sbjct: 1   MADKPEVLEAVLKEAVDLENIPIEEVFQNLRCNANGLSTEAANERLAIFGHNKLEEKEES 60

Query: 61  XXXXXXGFMWNPLSWVMEXXXXXXXXXXHGGGKSPDYHDFVGIVILLVINSTISFIEE 118
                 GFMWNPLSWVME          +GGGK PD+ DFVGI+ LL INSTISFIEE
Sbjct: 61  KVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLFINSTISFIEE 118


>GSVIVT01008074001 assembled CDS
          Length = 956

 Score =  144 bits (363), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/118 (55%), Positives = 83/118 (70%)

Query: 1   MVDESVALDAVIKEAVDLENIPLEEVFDHLKCTKNGLSSDAVQERLDLFGHNXXXXXXXX 60
           M D+   L+AV+KE VDLENIP+EEVF++L+C++ GL+S+A QERL +FG+N        
Sbjct: 1   MADKPEVLEAVLKETVDLENIPIEEVFENLRCSREGLTSEAAQERLAIFGYNRLEEKKES 60

Query: 61  XXXXXXGFMWNPLSWVMEXXXXXXXXXXHGGGKSPDYHDFVGIVILLVINSTISFIEE 118
                 GFMWNPLSWVME          +GGGK PD+ DFVGI+ LL+INSTISFIEE
Sbjct: 61  KFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEE 118


>GSVIVT01001052001 assembled CDS
          Length = 952

 Score =  135 bits (340), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 61/114 (53%), Positives = 78/114 (68%)

Query: 5   SVALDAVIKEAVDLENIPLEEVFDHLKCTKNGLSSDAVQERLDLFGHNXXXXXXXXXXXX 64
           +++L+ +  E+VDLE IP+EEVF+ LKCTK+GL+S+  + RL +FGHN            
Sbjct: 4   TMSLEEIKNESVDLERIPIEEVFEQLKCTKDGLTSEEGEHRLQIFGHNKLEEKKESKILK 63

Query: 65  XXGFMWNPLSWVMEXXXXXXXXXXHGGGKSPDYHDFVGIVILLVINSTISFIEE 118
             GFMWNPLSWVME          +GGGK PD+ DFVGI +LL+INSTISFIEE
Sbjct: 64  FLGFMWNPLSWVMECAAIMAIVLANGGGKPPDWQDFVGITVLLIINSTISFIEE 117


>GSVIVT01035525001 assembled CDS
          Length = 862

 Score =  132 bits (331), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/116 (51%), Positives = 77/116 (66%)

Query: 3   DESVALDAVIKEAVDLENIPLEEVFDHLKCTKNGLSSDAVQERLDLFGHNXXXXXXXXXX 62
           D+S+ L+ +  E+VDLE IP+EEVF+ LKC++ GL+SD    RL +FG N          
Sbjct: 4   DKSIGLEEIKNESVDLERIPIEEVFEQLKCSREGLTSDEGASRLQIFGPNKLEEKKESKV 63

Query: 63  XXXXGFMWNPLSWVMEXXXXXXXXXXHGGGKSPDYHDFVGIVILLVINSTISFIEE 118
               GFMWNPLSWVME          +GGG+ PD+ DFVGI++LL+INSTISFIEE
Sbjct: 64  LKFLGFMWNPLSWVMEAAAIMAIALANGGGQPPDWQDFVGIIVLLLINSTISFIEE 119


>GSVIVT01029244001 assembled CDS
          Length = 954

 Score =  130 bits (328), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/116 (53%), Positives = 75/116 (64%)

Query: 3   DESVALDAVIKEAVDLENIPLEEVFDHLKCTKNGLSSDAVQERLDLFGHNXXXXXXXXXX 62
           D+S++L+ +  E VDLE IP+EEVF+ LKCTK GL+S   + RL +FG N          
Sbjct: 4   DKSISLEEIKNETVDLEKIPIEEVFEQLKCTKEGLTSQEGEARLQIFGPNKLEEKKESKF 63

Query: 63  XXXXGFMWNPLSWVMEXXXXXXXXXXHGGGKSPDYHDFVGIVILLVINSTISFIEE 118
               GFMWNPLSWVME          +G G+ PD+ DFVGIV LLVINSTISFIEE
Sbjct: 64  LKFLGFMWNPLSWVMEAAALMAIVLANGDGQPPDWQDFVGIVCLLVINSTISFIEE 119


>GSVIVT01016862001 assembled CDS
          Length = 952

 Score =  122 bits (306), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 58/113 (51%), Positives = 74/113 (65%), Gaps = 2/113 (1%)

Query: 8   LDAVIKEAVDLENIPLEEVFDHLKCTKNGLSSDAVQERLDLFGHNXXXXXXXXX--XXXX 65
           L+ +  E VDLE IP+EEVF+ LKCT++GL+++  ++RL +FG N               
Sbjct: 5   LEEIKNETVDLERIPVEEVFEQLKCTRDGLTTEEGEKRLQIFGPNKLEEKEANSLCSRAF 64

Query: 66  XGFMWNPLSWVMEXXXXXXXXXXHGGGKSPDYHDFVGIVILLVINSTISFIEE 118
            GFMWNPLSWVME          +GGG+ PD+ DFVGIV+LL INSTISFIEE
Sbjct: 65  LGFMWNPLSWVMEAAAIMAIVLANGGGEDPDWQDFVGIVVLLFINSTISFIEE 117


>GSVIVT01016652001 assembled CDS
          Length = 970

 Score =  115 bits (289), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 54/106 (50%), Positives = 68/106 (64%)

Query: 13  KEAVDLENIPLEEVFDHLKCTKNGLSSDAVQERLDLFGHNXXXXXXXXXXXXXXGFMWNP 72
           +E +DLE IPLEEVF+ L+ ++ GLSS+  + RL +FG N               FMWNP
Sbjct: 17  REGIDLERIPLEEVFEQLRTSRGGLSSEDAEARLIIFGPNKLEEKPENKFLKFLSFMWNP 76

Query: 73  LSWVMEXXXXXXXXXXHGGGKSPDYHDFVGIVILLVINSTISFIEE 118
           LSWVME          +GGG+ PD+ DFVGI+ LL+INSTISFIEE
Sbjct: 77  LSWVMEAAAVMAIVLANGGGEGPDWQDFVGILCLLIINSTISFIEE 122


>GSVIVT01019734001 assembled CDS
          Length = 1462

 Score =  110 bits (276), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/118 (45%), Positives = 71/118 (60%)

Query: 1   MVDESVALDAVIKEAVDLENIPLEEVFDHLKCTKNGLSSDAVQERLDLFGHNXXXXXXXX 60
           M   ++AL+A+ +  VDLENIPLEEVF+ LKC + GLS D V +RL +FG+N        
Sbjct: 595 MDKTAIALEAISRGIVDLENIPLEEVFEKLKCAREGLSLDEVDKRLTVFGYNRLEEKKEN 654

Query: 61  XXXXXXGFMWNPLSWVMEXXXXXXXXXXHGGGKSPDYHDFVGIVILLVINSTISFIEE 118
                 GFMWNPLSWVME            G ++  YHD  GI+ LL+++S ISF+ E
Sbjct: 655 KILKFLGFMWNPLSWVMEAAAIMAISVADLGNEAVGYHDVFGILFLLLVDSGISFVFE 712


>GSVIVT01007148001 assembled CDS
          Length = 185

 Score = 99.4 bits (246), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 59/100 (59%)

Query: 19  ENIPLEEVFDHLKCTKNGLSSDAVQERLDLFGHNXXXXXXXXXXXXXXGFMWNPLSWVME 78
           ENIPLEEVF+ LKCT+ GL  D V++RL +FGHN              GFMWNPLSWVME
Sbjct: 16  ENIPLEEVFEKLKCTREGLGLDEVEKRLKVFGHNKLEEKKENKIIKFLGFMWNPLSWVME 75

Query: 79  XXXXXXXXXXHGGGKSPDYHDFVGIVILLVINSTISFIEE 118
                         K  DY  F+GI+ L +INS ISF+EE
Sbjct: 76  AAAIMAISLALKENKDVDYITFLGILALHIINSAISFVEE 115