Jatropha Genome Database

JcCA0079871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0079871.20 - phase: 2 /pseudo/partial
         (372 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033553001 assembled CDS                                       424   e-119
GSVIVT01007565001 assembled CDS                                        74   1e-13

>GSVIVT01033553001 assembled CDS
          Length = 542

 Score =  424 bits (1091), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/440 (53%), Positives = 276/440 (62%), Gaps = 76/440 (17%)

Query: 1   NIGAPAKGRKSDLVSALKFFVSKHLDGXXXXXXXXXXXXTCTEKLSLQKGATNVS----D 56
           ++G PAKG K DLV ALK F    LD                  LS +K A N+S    +
Sbjct: 111 SVGVPAKGCKRDLVLALKSF----LDNKASDESSQAEEQLELNILSKRK-AKNLSVEDHE 165

Query: 57  EKLNTVSEDLCFKQSKRRVKQSVAVGTNESVKVDSEMSTIKEKDSVKREEVSA------- 109
           + +N VS+    KQSKRR KQS        ++V++E+   KEK S+K +E S        
Sbjct: 166 QNVNIVSDASGLKQSKRRAKQS---PVEAKIEVNTEIINEKEKPSIKNKEASGNKLYQGE 222

Query: 110 -------------------------EPWTILAHKKPQKGWIPYNPGTMRPPPPAGDTKFV 144
                                    EPWT+L HKKPQ+GWIPYNP TMRPPP  GD KFV
Sbjct: 223 RKASSRSSIKQIAVTERIDISMNEPEPWTVLTHKKPQEGWIPYNPRTMRPPPLTGDAKFV 282

Query: 145 KLMSWNVNGLRALLKSEGFSALELAQRENFD----------EKDVESIKHCLIDGYDSSF 194
           KLMSWNVNGLR LLKS+GFSAL+LAQRE+FD          EKDVE+IK  +I+GY++SF
Sbjct: 283 KLMSWNVNGLRGLLKSKGFSALKLAQREDFDVLSLQETKLQEKDVEAIKQSVIEGYENSF 342

Query: 195 WTCSRSKLGYSGTAIISRIKPISVSYGLGIPDHDSEGRLVTAEFDSFYLISAYVPNSGDG 254
           WTCS SKLGYSGTAIISRIKP+SV YGLGI DHDSEGRL+TAEF+SFYL+S YVPNSGDG
Sbjct: 343 WTCSVSKLGYSGTAIISRIKPLSVRYGLGISDHDSEGRLLTAEFESFYLLSGYVPNSGDG 402

Query: 255 LKRLSYRIGEWDLSLSNYLKELEKSKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEER 314
           LKRLSYR+ +WD +L +Y+KELEKSKPVILTGDLNCAHQEIDI++PAGNRRSAGFTDEER
Sbjct: 403 LKRLSYRVTQWDSALGSYMKELEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTDEER 462

Query: 315 QSFGTKLFVKGICGYFQKTTSKMLXAILTG----------------------VIDMAGAK 352
           QS       KG    F+K    ++     G                      + D     
Sbjct: 463 QSLEKNFLSKGFVDSFRKQHPGVVGYTYWGYRNGCRKSNKGWRLDYFLVSESIADKVHDS 522

Query: 353 PIKPDVNGSDHCPIGLILKL 372
            I PD+ GSDHCPIGL+LKL
Sbjct: 523 YILPDIGGSDHCPIGLVLKL 542


>GSVIVT01007565001 assembled CDS
          Length = 357

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 23/145 (15%)

Query: 194 FWTCSRSKLGYSGTAIISR--IKPISVSYGLG--IPDHDSEGRLVTAEFDSFYLISAYVP 249
           +W+ + SK  Y+GTA+  +   +P  VS+ +      H+ EGR++ AEF+SF L++ YVP
Sbjct: 124 WWSLADSK--YAGTALFVKKCFQPKKVSFSIDQKASKHEPEGRVILAEFESFRLLNTYVP 181

Query: 250 NSGDGLKRLSY-RIGEWDLSLSNYLKELEKSKPVILTGDLNCAHQEIDIYNP-------- 300
           N+G   +  S+ R  +WD  +  ++ +    KP+I  GDLN +H+EID+ +P        
Sbjct: 182 NNGWKDEETSFQRRRKWDKRMLEFVVQ-SSDKPLIWCGDLNVSHEEIDVSHPEFFSAAKH 240

Query: 301 ----AGNRRSA---GFTDEERQSFG 318
                 N+      GFT  ER+ FG
Sbjct: 241 NGYVPPNKEDCGQPGFTLAERRRFG 265