Jatropha Genome Database

JcCA0079871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0079871.10 - phase: 0 
         (121 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033552001 assembled CDS                                        94   1e-20

>GSVIVT01033552001 assembled CDS
          Length = 425

 Score = 94.0 bits (232), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/88 (57%), Positives = 61/88 (69%)

Query: 34  DSPIASPKSGFIFKVSIXXXXXXXXXXXXXXEIHPALQRSILINAALSLAGFFLTVKLIP 93
           D PIA PKSG I K+S+               +   L+RSILINA LSLAGFF+T  +IP
Sbjct: 35  DPPIAPPKSGTILKLSLLLIIPYAYLILFHYRVDADLKRSILINAGLSLAGFFVTRTMIP 94

Query: 94  VASRYVLRRNLFGFDINKKGTPHGNVKV 121
           VAS YV+RR+LFG+DINKKGTP G+VKV
Sbjct: 95  VASSYVIRRSLFGYDINKKGTPQGSVKV 122