Jatropha Genome Database

JcCA0079711.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0079711.20 - phase: 2 /partial
         (130 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021794001 assembled CDS                                        82   7e-17

>GSVIVT01021794001 assembled CDS
          Length = 321

 Score = 82.0 bits (201), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 82/125 (65%), Gaps = 7/125 (5%)

Query: 2   FAELHVKICVIVLCKFLQPLNKHLQLLNNEEKVKNVMEKVLQEKHSKKNDQKDTEIIRGF 61
            AE HV   VI   KF    +K  +LL +++++ NV+E++L EK+  K+   +T++IR F
Sbjct: 201 LAEKHV--VVIQDIKFSDG-SKLRKLLGDKQQLNNVIEQILLEKYRAKDGPGNTKLIRDF 257

Query: 62  LEENGKELGLPPSEANEAVMLLYDAVFAEVECGKCIAESE-DEFRELVKEILKNFAQQLQ 120
           LE++GK LGLPP EA+EA+   Y+ VF  V+  K   E E  EF  LV++IL+ FA +L+
Sbjct: 258 LEKHGKVLGLPPPEAHEAI---YNEVFLAVDDKKNNEELEKGEFGALVEDILEKFADELE 314

Query: 121 ANPVY 125
           ANPV+
Sbjct: 315 ANPVF 319