Jatropha Genome Database

JcCA0079611.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0079611.30 + phase: 0 /pseudo/partial
         (420 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013506001 assembled CDS                                       100   2e-21
GSVIVT01013538001 assembled CDS                                        89   4e-18
GSVIVT01026027001 assembled CDS                                        79   5e-15
GSVIVT01026026001 assembled CDS                                        76   4e-14
GSVIVT01031692001 assembled CDS                                        74   2e-13
GSVIVT01030585001 assembled CDS                                        73   3e-13
GSVIVT01031694001 assembled CDS                                        51   1e-06

>GSVIVT01013506001 assembled CDS
          Length = 423

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 162/360 (45%), Gaps = 39/360 (10%)

Query: 35  DILSRVPVESLLRFRCVSKSWCAQIDNPNFIKTHLKKSAAT-----LISFLQTAIQNAFT 89
           DI  R+PV+S++RFRCV KSWC   D+P+FI  HL++++A      L   L ++ Q  ++
Sbjct: 27  DIHLRLPVKSIVRFRCVCKSWCTLFDDPDFISMHLRQASANSNGRLLFKHLSSSEQEIYS 86

Query: 90  WXTLIQSMQSLSLITLXIFPLTSIT----IALSTVQLVQITISSWWVPVMGXYALGMLLE 145
               ++S  + + +     P+ S T    I  S+  L+ +T S++    +   +L + L 
Sbjct: 87  ----LRSNIAFAEVRRLEVPVPSKTDYYQIVGSSNGLICLTESNFKGSYL---SLNLFLW 139

Query: 146 GLFXXTQXLESIKFCLFLLLDAQNKGNNMWSAWSFGFGYDPISDDYKVVRLGQYLDLSDG 205
                     +I+    L     N   +       GF + P+ +DYKVVR+  ++     
Sbjct: 140 N--------PAIREFQTLPKYHINNFTSPLMVVGLGFAFHPVINDYKVVRIVYFMR---- 187

Query: 206 HFETETLVCNLKDNAWREIPGMSYMLGIDQKMGVLVGDALHWLVSLKFMLIN-PNQIVGF 264
           +  +E  V +L+  +WR++                +  ALHWL   K  + N  N I+ F
Sbjct: 188 NKTSEADVYSLRTGSWRKVDANICCYIHSNVSRTFINGALHWLAGKKNEMDNTDNLILSF 247

Query: 265 DVRVEQFREVPAPRIFVDQNAYASLEVVTLGVVGEWLSVKAINR-GAPKRLDVWVMKEYD 323
           D+  + F+E+  P        Y  L    L      LSV   +   + +  DVWVM+EY 
Sbjct: 248 DMAKDVFKEIMLPDF-----GYDELIRKCLADYKGSLSVLFYDAYHSNENCDVWVMEEYG 302

Query: 324 VKESWTKLFSVTSNELSSLKCMRTLAFSNNGYELLLGLWDGNLVGYNPKEKSVRKVNLHG 383
           V +SWTK F++       ++ +    F +NG  +L     G  + +NP     R + + G
Sbjct: 303 VAKSWTKHFTIR----HEIEIIIPFEFFDNGEAILQKKKSGGFISWNPDGIRFRDLGVSG 358


>GSVIVT01013538001 assembled CDS
          Length = 711

 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 153/350 (43%), Gaps = 46/350 (13%)

Query: 28  LPPEIKTDILSRVPVESLLRFRCVSKSWCAQIDNPNFIKTHLKKSAATLISFL--QTAIQ 85
           +P  I  DILSR+PV+SLLRFRCV K+WC  I +P F++THL++     +  L    ++ 
Sbjct: 4   IPEVIMVDILSRLPVKSLLRFRCVCKAWCTLISHPQFVETHLRQQHKRPVIGLVVPHSVD 63

Query: 86  NAFTWXTLIQSMQSLSLITLXIFPLTSITIALSTVQLVQITISSWWVPVMGXYALGMLLE 145
           +      L +   ++ L      P    T  L +   +   +  ++    G Y+L    +
Sbjct: 64  DP-----LHKDDLAVDLELHLGIPNKRTTTVLDSCNGLLCVVDCYY----GFYSLKPPQK 114

Query: 146 GLFXXTQXLESIKFCLFLLLDAQNKGNNMWSAWSFGFGYDPISDDYKVVRLGQYLDLSDG 205
            +        S + C  +   +     N   ++ +  G D    DYK+VR+  +L    G
Sbjct: 115 LIL----WNPSTRQCNHIPCPSFVGYQNCMYSFFYDPGSD----DYKIVRIFTFL----G 162

Query: 206 HFETETLVCNLKDNAWREIPGMSYMLGIDQKMGVLVGDALHWLVSLKFMLINPNQ---IV 262
             +T   +  LK N WR +   ++   I           LHWL + ++     ++   +V
Sbjct: 163 KDKTGIDIFTLKTNKWRRVE-ETHSSVIGYWSATYFNGNLHWL-AFRYGGYGEDERSSMV 220

Query: 263 GFDVRVEQFREVPAPRIFVDQNAYASLEVVTLGVVGEWLSVKAINRGAPKRLDVWVMKEY 322
            F +R E+F+E+  P         +   V  L V+G  L V  +        D WVM+EY
Sbjct: 221 AFSLREEKFQEMELP---------SQRAVFGLRVLGGCLCVDGLYTN-----DKWVMEEY 266

Query: 323 DVKESWTKLFSVTS--NELSSLKCMRTLAFSNNGYELLLGLWDGNLVGYN 370
            +KESW  L ++     + SS K  R L F  NG  +LL L DG     N
Sbjct: 267 GIKESWKSLIAIPYRVGDGSSWKLPRVLRFLENG--VLLVLHDGKFRNTN 314


>GSVIVT01026027001 assembled CDS
          Length = 372

 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 111/226 (49%), Gaps = 26/226 (11%)

Query: 179 SFGFGYDPISDDYKVVRLGQYLDLSDGHFETETLVCNLKDNAWREIPGMSYMLGIDQKMG 238
           ++GFGYD I+DDYKV R+G Y      ++E +  V +L+ N WR+I      L  D+   
Sbjct: 144 AYGFGYDSIADDYKVTRVGCY--CIGRYYEYQVRVFSLRGNVWRKIENFPCYLFTDEP-- 199

Query: 239 VLVGDALHWLVSLKFMLINPNQ-----IVGFDVRVEQFREVPAPRIFVDQNAYASLEVVT 293
                 +H   S+ F  +  ++     +VG D+  E +R VP P       A  +++ + 
Sbjct: 200 -----GIHVNGSINFGGVGDSENYYWSVVGLDLASESYRMVPLP-----DCADPNVKPMI 249

Query: 294 LGVVGEWLSVKAINRGAPKRLDVWVMKEYDVKESWTKLFSVTS-NELSSLKCMRTLAFSN 352
           + + G + ++   +      +DVWVM++Y VK+SW KL +V    +  ++ C + + F  
Sbjct: 250 MALGGRFCTIFDNDEA----VDVWVMEQYGVKKSWNKLVTVPYFPDPMTVDCTKPVFFLR 305

Query: 353 NGYELLLGLWDGNLVGYNPKEKSVRKVNLHGSLTPFVAEVFRGSLV 398
           +G  +L+  + G LV YN          ++G+      EV+  ++V
Sbjct: 306 DG-AILMEFY-GLLVLYNIDRDESTIPTIYGTRHCHEVEVYLETIV 349



 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 33/49 (67%)

Query: 25 LDRLPPEIKTDILSRVPVESLLRFRCVSKSWCAQIDNPNFIKTHLKKSA 73
          L  +P EI  +IL  +PV+SL+RF+CVSKSW   I +P+F K  L  +A
Sbjct: 23 LPHIPDEIILEILCLLPVKSLMRFKCVSKSWREMISDPDFEKKQLAVAA 71


>GSVIVT01026026001 assembled CDS
          Length = 243

 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 109/224 (48%), Gaps = 22/224 (9%)

Query: 179 SFGFGYDPISDDYKVVRLGQYLDLSDGHFETETLVCNLKDNAWREIPGMSYMLGIDQKMG 238
           S+ FGYD I+DDYKVVRL     ++D  +E    V +L+ NAWR+I    Y L  D+  G
Sbjct: 32  SYAFGYDSITDDYKVVRLVC-CSINDS-YEYHVEVFSLRSNAWRKIRSFPYFLFTDEA-G 88

Query: 239 VLVGDALHWLVSLKFMLINPNQ--IVGFDVRVEQFREVPAPRIFVDQNAYASLEVVTLGV 296
             V  +++W VS      N +   I   D+  E +  VP P       A  +L+ +   +
Sbjct: 89  KHVNGSINWAVSRD---KNNDHWFIASLDLATESYEVVPQPDC-----ANETLKPIIRVL 140

Query: 297 VGEWLSVKAINRGAPKRLDVWVMKEYDVKESWTKLFSVT--SNELSSLKCMRTLAFSNNG 354
            G++  +   +      +DVWVM+EY VKESW+KL +V   S+ L +    + L +   G
Sbjct: 141 GGQFCIIFEYD----DIIDVWVMQEYGVKESWSKLVTVPFFSDPLDA-NYAKPLFYLKEG 195

Query: 355 YELLLGLWDGNLVGYNPKEKSVRKVNLHGSLTPFVAEVFRGSLV 398
             +L+  + G L+ YN          ++G       EV+  S+V
Sbjct: 196 -AILIDFY-GMLILYNFNRNESTSPMIYGVHHYHEVEVYLESMV 237


>GSVIVT01031692001 assembled CDS
          Length = 357

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 104/222 (46%), Gaps = 25/222 (11%)

Query: 181 GFGYDPISDDYKVVRLGQYLDLSDGHFETETLVCNLKDNAWREIPGMSYMLGIDQKMGVL 240
           GFGYD  +DDYKV      + + + +FET   V +LK N W+ I    +         VL
Sbjct: 151 GFGYDSFADDYKVF----LVSMLNPNFETVVDVFSLKSNKWKRIQEKHHTRAARMCATVL 206

Query: 241 VGDALHWLVSLKFMLINPNQIVGFDVRVEQFREVPAPRIFVDQNAYASLEVVTLGVVGEW 300
            G ALHW+      ++  + I+ FD   E+FRE+  PR   ++  Y     V L VVG  
Sbjct: 207 HG-ALHWVAYDP--ILGFDTIMAFDFEKERFREMAIPR--EEEELY-----VKLRVVGGC 256

Query: 301 LSVKAINRGAPKRLDVWVMKEYDVKESWTKLF----SVTSNELSSLKCMRTLAFSNNGYE 356
           L V     G+     +WVMKEY V  SW+K+     S+ +N     +C   L   NN + 
Sbjct: 257 LCV----HGSKDPSKMWVMKEYGVDTSWSKMASPYNSLRNNLNEEFRC-ELLHTLNNEHM 311

Query: 357 LLLGLWDGNLVGYNPKEKSVRKVNLHGSLTPFVAEVFRGSLV 398
           LL+      L+  + KE + + +  +G      A ++  +LV
Sbjct: 312 LLVN--KEKLMLCDQKENTYKNIMPYGRWFRHDANLYVETLV 351



 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 32/44 (72%)

Query: 27 RLPPEIKTDILSRVPVESLLRFRCVSKSWCAQIDNPNFIKTHLK 70
           LP  I  +IL R+PV+SL+R RCV K+W   I +P+F+K+HL+
Sbjct: 3  ELPLHIIENILLRLPVKSLIRSRCVCKAWRTLISHPHFVKSHLR 46


>GSVIVT01030585001 assembled CDS
          Length = 423

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 93/207 (44%), Gaps = 16/207 (7%)

Query: 180 FGFGYDPISDDYKVVRLGQYLDLSDGHFETETLVCNLKDNAWREIPGMSYMLGIDQKMGV 239
            GF + P  DDYKVVR+  +L         E  V +LK +AW+ I    +    D     
Sbjct: 169 LGFAFHPQIDDYKVVRIVYFLKSK----TYEVHVYSLKQDAWKNIDAKVHCHIHDTVSRT 224

Query: 240 LVGDALHWLVSLKFMLINPNQ--IVGFDVRVEQFREVPAPRIFVDQNAYASLEVVTLGVV 297
            V  ALHWL + K      +   I+ FD+  +  RE+  P    D+++         G+ 
Sbjct: 225 FVNGALHWLAAKKNQGRGKSDDLILSFDMVEDNLREMILPEFGYDESSTQKCLADYKGL- 283

Query: 298 GEWLSVKAIN-RGAPKRLDVWVMKEYDVKESWTKLFSVTSNELSSLKCMRTLAFSNNGYE 356
              LSV   N        D+WVM EY V  SWTK F+   +    ++ +  L F +NG E
Sbjct: 284 ---LSVLVYNAHRCNDNCDIWVMDEYGVASSWTKRFTFCLD----VEILILLDFLDNG-E 335

Query: 357 LLLGLWDGNLVGYNPKEKSVRKVNLHG 383
           +++   +G LV  +P    +R + + G
Sbjct: 336 VVVQNKNGGLVACDPNGGKIRDLKVAG 362


>GSVIVT01031694001 assembled CDS
          Length = 184

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 32/43 (74%)

Query: 28 LPPEIKTDILSRVPVESLLRFRCVSKSWCAQIDNPNFIKTHLK 70
          LP  I  +IL R+PV+SL+RFRCV K+W   I +P+F+++H +
Sbjct: 4  LPLHIIENILLRLPVKSLIRFRCVCKAWRTLISHPHFVRSHFR 46