Jatropha Genome Database

JcCA0079611.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0079611.10 + phase: 0 /partial
         (136 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032920001 assembled CDS                                       182   5e-47
GSVIVT01012213001 assembled CDS                                       181   8e-47

>GSVIVT01032920001 assembled CDS
          Length = 178

 Score =  182 bits (461), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 85/132 (64%), Positives = 105/132 (79%)

Query: 1   VSLLKSLPLRLYANTLAFNNISFFTILDWTNIGRLHCLLPWWEDATVNFMFSGGYNIISQ 60
           VSLLKS PLRL +N LA+ +ISF T  DWTN+G LHCLLPWWEDATVNFM SGGYN+I+Q
Sbjct: 25  VSLLKSFPLRLCSNLLAYKSISFATSFDWTNVGLLHCLLPWWEDATVNFMKSGGYNVIAQ 84

Query: 61  IKQVKKRTLIIYGENDKIVNYKLVVKLHSELGNAIMRQVADSGHLPHVDKPNCVAKLISD 120
           IKQVK++TL+I+GE+D+IV+ KL ++L  EL +AIM  + D GHLPH++KPN VAKLI+D
Sbjct: 85  IKQVKQKTLVIWGEHDQIVSNKLAMRLQHELQDAIMHHIPDCGHLPHLEKPNSVAKLIAD 144

Query: 121 FALHDELIREPF 132
           FA  D      F
Sbjct: 145 FAQGDRCQEAHF 156


>GSVIVT01012213001 assembled CDS
          Length = 340

 Score =  181 bits (460), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 82/125 (65%), Positives = 101/125 (80%)

Query: 1   VSLLKSLPLRLYANTLAFNNISFFTILDWTNIGRLHCLLPWWEDATVNFMFSGGYNIISQ 60
           V +LKS+PLR YAN LAF +ISF    DWT +GRLHCL PWWEDATVNFM SGGYN+ SQ
Sbjct: 205 VYILKSIPLRFYANVLAFKSISFTRSSDWTKVGRLHCLYPWWEDATVNFMISGGYNVSSQ 264

Query: 61  IKQVKKRTLIIYGENDKIVNYKLVVKLHSELGNAIMRQVADSGHLPHVDKPNCVAKLISD 120
           I+QVKK+TLII+GE+D+I++ KL V+LH EL NAI+ Q+ D GHLPHV+KP+ V+KLI +
Sbjct: 265 IQQVKKKTLIIWGEDDQIISNKLAVRLHCELPNAIISQIPDCGHLPHVEKPHSVSKLIME 324

Query: 121 FALHD 125
           F   D
Sbjct: 325 FVQED 329