Jatropha Genome Database

JcCA0079261.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0079261.20 + phase: 0 
         (204 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012622001 assembled CDS                                        51   4e-07

>GSVIVT01012622001 assembled CDS
          Length = 215

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 8/161 (4%)

Query: 20  LFMWQRFTTAKPKCFLQEIYVPALNQSSNSPSNTTLFFQLKLENTNIVKGVYYDPVNVTF 79
             +W      +P+  + E  VP L + +     T + F +   N+N   G+YYD +  + 
Sbjct: 53  FILWLSLRPHRPRFHIHEFSVPNLTEGAGF---TEITFNVTARNSNQNVGIYYDSMEASI 109

Query: 80  FDSPNRTHSIGNFTIPKFYQGRNK----KAIKSGEINDTGLDIEAVLRAVSNGSVVFRVD 135
           +    R  +  +   P + + +N     K +    I +       ++  V+ G+VVF ++
Sbjct: 110 YYKDQRV-ATTSLLFPFYQEPKNTTVIYKELNGNSITENSERTMELMNDVAKGTVVFGLE 168

Query: 136 MATSVRNKFVVFKTKRRRINVGAYVNVSNQGTQVNPRKGVR 176
           + +++R K   +KTK  R++    V V   G  +   K  R
Sbjct: 169 LTSTIRFKVSTWKTKGHRMHANCDVRVGQDGNILGAYKDKR 209