Jatropha Genome Database

JcCA0078611.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0078611.10 - phase: 2 /TE/partial
         (1269 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024357001 assembled CDS                                        54   5e-07

>GSVIVT01024357001 assembled CDS
          Length = 851

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 36/64 (56%)

Query: 766 PDYQELKVFVYLAYATTLSSHRQKLDPRVRKSIFLGFKPSTKGYLLMDLKNRKMFSSQHV 825
           P  +  KVF  L Y+      R KLD    K IF+G+   +KGY L +LK  K+  S++V
Sbjct: 580 PSVRHFKVFGCLCYSQVPKERRSKLDETSEKCIFMGYSSQSKGYRLYNLKTNKLIISRYV 639

Query: 826 IFYE 829
           IFYE
Sbjct: 640 IFYE 643