Jatropha Genome Database

JcCA0078541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0078541.10 + phase: 0 /partial
         (279 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026563001 assembled CDS                                       463   e-131

>GSVIVT01026563001 assembled CDS
          Length = 465

 Score =  463 bits (1191), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 219/274 (79%), Positives = 243/274 (88%)

Query: 6   DKLTPLKSAVAGLNQISENEKNGFISLVARYLSGEAQHVDWSKIQTPTDEVVVPYDTLAP 65
           +KL+ L+SAVAGL+QISENEK+GFI+LV+RYLSGEAQH++WSKI+TPTDEVVVPYDTLAP
Sbjct: 2   EKLSQLRSAVAGLDQISENEKSGFINLVSRYLSGEAQHIEWSKIKTPTDEVVVPYDTLAP 61

Query: 66  VPDDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIEHLNSKY 125
            P+D  E                    MGCTGPKSVIEVRNGLTFLDLIVIQIE+LN+KY
Sbjct: 62  TPEDSVETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNNKY 121

Query: 126 GCNVPLLLMNSFNTHDDTQKIIEKYSKSNVEIHTFNQSQYPRIVVEDFTPLPCKGQTGKD 185
           GC VPLLLMNSFNTHDDT KI++KY KSN+EIHTFNQSQYPR+VV+DF+PLP KG TGKD
Sbjct: 122 GCKVPLLLMNSFNTHDDTLKIVQKYEKSNIEIHTFNQSQYPRVVVDDFSPLPSKGNTGKD 181

Query: 186 GWYPPGHGDVFPSLKNSGKLDTLLSQGKEYVFVANSDNLGAIVDLKILSHLIRNKNEYCM 245
           GWYPPGHGDVFP+L NSGKL+ LLSQGKEYVFVANSDNLGA+VDLKIL+HLI+NKNEYCM
Sbjct: 182 GWYPPGHGDVFPALMNSGKLEKLLSQGKEYVFVANSDNLGAVVDLKILNHLIKNKNEYCM 241

Query: 246 EVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEH 279
           EVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEH
Sbjct: 242 EVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEH 275