Jatropha Genome Database

JcCA0078521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0078521.10 - phase: 0 /pseudo/partial
         (320 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034496001 assembled CDS                                       338   2e-93
GSVIVT01025261001 assembled CDS                                       172   1e-43
GSVIVT01025260001 assembled CDS                                        80   1e-15
GSVIVT01008900001 assembled CDS                                        51   7e-07

>GSVIVT01034496001 assembled CDS
          Length = 375

 Score =  338 bits (867), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 167/215 (77%), Positives = 183/215 (85%), Gaps = 11/215 (5%)

Query: 3   PLSPILPFEVLSAKLGRKPEDIIKLDANENPYGPPPEVFEALGSLKFPYIYPDPQSRGLR 62
           P  PILPFEVLS++LGRKPEDI+KLDANENPYGPPPEVFEALGSLKFPY+YPDP+SR LR
Sbjct: 28  PYQPILPFEVLSSRLGRKPEDIVKLDANENPYGPPPEVFEALGSLKFPYVYPDPESRRLR 87

Query: 63  EALAQDSGLESDYILVGI-----------CTLDPGDKIVDCPPTFTMYQFDAAVNGAEVI 111
            ALA+DSG+ESDYIL G            C LDPGDKIVDCPPTFTMY+FDAAVNGA V+
Sbjct: 88  GALAEDSGIESDYILAGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGALVL 147

Query: 112 KVLRKPDFSLNVELISDVVRQENPKCIFLTSPNNPDGSIINDEDLLKILDLPILVVLDEA 171
           KV R  DFSLN+E I+DVV +E PKCIFLTSPNNPDGSIINDE LLKIL+LPILVVLDEA
Sbjct: 148 KVPRNSDFSLNLEAIADVVEKEKPKCIFLTSPNNPDGSIINDEILLKILELPILVVLDEA 207

Query: 172 YIEFSGLESRMKWVKKHDNLIVLRTFSKRAAFGEL 206
           YIEFSG++SRM WVKK +NLIVLRTFSKRA    L
Sbjct: 208 YIEFSGIKSRMGWVKKFENLIVLRTFSKRAGLAGL 242


>GSVIVT01025261001 assembled CDS
          Length = 133

 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/124 (68%), Positives = 96/124 (77%), Gaps = 11/124 (8%)

Query: 35  GPPPEVFEALGSLKFPYIYPDPQSRGLREALAQDSGLESDYILVGI-----------CTL 83
           GPP EVFEALGSLKFPY+Y DP+S  L  ALA+D G+ESDYI+ G            C L
Sbjct: 8   GPPLEVFEALGSLKFPYVYSDPESCRLHAALAKDLGIESDYIIAGCGADELIDLIMRCVL 67

Query: 84  DPGDKIVDCPPTFTMYQFDAAVNGAEVIKVLRKPDFSLNVELISDVVRQENPKCIFLTSP 143
           DPGDK+VDCPP FTMY+FDAAVNGA V+KV R  DFSLNVEL +DVV++E PKCIFLTSP
Sbjct: 68  DPGDKVVDCPPIFTMYEFDAAVNGALVLKVPRNSDFSLNVELTADVVQKEKPKCIFLTSP 127

Query: 144 NNPD 147
           NNPD
Sbjct: 128 NNPD 131


>GSVIVT01025260001 assembled CDS
          Length = 179

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 43/50 (86%)

Query: 157 LKILDLPILVVLDEAYIEFSGLESRMKWVKKHDNLIVLRTFSKRAAFGEL 206
           + ILDLPILVVLDEAYIEFSG++SRM WVKK +NLIVLRTFSKRA    L
Sbjct: 1   MNILDLPILVVLDEAYIEFSGIKSRMGWVKKFENLIVLRTFSKRAGLAGL 50


>GSVIVT01008900001 assembled CDS
          Length = 409

 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 21/141 (14%)

Query: 51  YIYPDPQSRGLREALAQDSGL----ESDYILVGICT----------LDPGDKIVDCPPTF 96
           Y  PD  S  + +   +D+GL    E +  +   CT          ++PGD+++   P +
Sbjct: 85  YGVPDLNS-AVADRFKKDTGLVVDPEKEVTVTSGCTEAIAATMLGLINPGDEVILFAPFY 143

Query: 97  TMYQFDAAVNGAEVIKV-LRKPDFSLNVELISDVVRQENPKCIFLTSPNNPDGSIINDED 155
             Y+   ++ GA++  + LR PDF++ ++ +   + + N + I + +P+NP G +   E+
Sbjct: 144 DSYEATLSMAGAQIKSITLRPPDFAVPMDELKSAISK-NTRAILINTPHNPTGKMFTREE 202

Query: 156 LLKILDL----PILVVLDEAY 172
           L  I  L     +LV  DE Y
Sbjct: 203 LNVIASLCIENDVLVFTDEVY 223