Jatropha Genome Database

JcCA0078491.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0078491.20 - phase: 0 
         (221 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000259001 assembled CDS                                       316   6e-87
GSVIVT01033008001 assembled CDS                                        82   1e-16
GSVIVT01008621001 assembled CDS                                        69   2e-12

>GSVIVT01000259001 assembled CDS
          Length = 483

 Score =  316 bits (809), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 147/184 (79%), Positives = 162/184 (88%)

Query: 35  DEGVHWGIQNGLYLSRSTIVYFKHNDMESLQNVLEKVTAENKRAKKLRRYIIVEAVYQNS 94
           DEGVHWGIQNGLYLSRSTIVYFKHNDMESLQN LEK+T ENKRAKKLRRYI+VEAVYQNS
Sbjct: 199 DEGVHWGIQNGLYLSRSTIVYFKHNDMESLQNTLEKITLENKRAKKLRRYIVVEAVYQNS 258

Query: 95  GQIAPLDEIIRLKEKYHFRVLLEESNSIGVLGRSGKGLTEYYGVPVEKIDIITAAMGHAL 154
           GQIAPLDEIIRLKEKY FRVLL+ESNS GVLG +G+GLTE++ VP+EKIDIITAAMGHAL
Sbjct: 259 GQIAPLDEIIRLKEKYRFRVLLDESNSFGVLGSTGRGLTEFFRVPIEKIDIITAAMGHAL 318

Query: 155 ATEGGFCTGTARIIDHQRLSSSGYTFXXXXXXXXXXXXITAIDVIEDNPALVTKLKENIA 214
           ATEGGFCTG+ R+IDHQRLSSSGY F            ITA+DV+E+NP L+ KLKENIA
Sbjct: 319 ATEGGFCTGSTRVIDHQRLSSSGYVFSASLPPYLASAAITAVDVLEENPDLIMKLKENIA 378

Query: 215 VLWK 218
           VLW+
Sbjct: 379 VLWQ 382


>GSVIVT01033008001 assembled CDS
          Length = 489

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 3/164 (1%)

Query: 39  HWGIQNGLYLSRSTIVYFKHNDMESLQNVLEKVTAENK-RAKKLRRYIIV--EAVYQNSG 95
           H  I NG   S +TI  F+HN    L+ VL +  AE + R  +  + IIV  E +Y   G
Sbjct: 195 HSSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVVVEGIYSMEG 254

Query: 96  QIAPLDEIIRLKEKYHFRVLLEESNSIGVLGRSGKGLTEYYGVPVEKIDIITAAMGHALA 155
            +  L EII + +KY     L+E++SIG +G++G+G+ E  GV    +DI+      +  
Sbjct: 255 DLCKLPEIIAICKKYKAYSYLDEAHSIGAVGKTGRGVCELLGVDPADVDILMGTFTKSFG 314

Query: 156 TEGGFCTGTARIIDHQRLSSSGYTFXXXXXXXXXXXXITAIDVI 199
           + GG+  G+  +I + + +S  + +            I+AI VI
Sbjct: 315 SCGGYIAGSKELIQYLKHTSPAHLYATSMSPPAVQQIISAIKVI 358


>GSVIVT01008621001 assembled CDS
          Length = 513

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 27/188 (14%)

Query: 39  HWGIQNGLYLSRSTIVYFKHNDMESLQNVLEKVTAENK-RAKKLRRYIIV--EAVYQNSG 95
           H  I NG   S +T+  F+HN    L+ VL +  AE + R  +  + IIV  E +Y   G
Sbjct: 195 HNSIVNGARGSGATVRVFQHNIPSHLEKVLREQIAEGQPRTHRPWKKIIVVVEGIYSMEG 254

Query: 96  QIAPLDEIIRLKEKYH---------------FR---------VLLEESNSIGVLGRSGKG 131
           ++  L EI+ + +KY                +R         V L+E++SIG +G++G+G
Sbjct: 255 ELCKLPEIVAICKKYKVCSSTQKNLQSSGACYRYASMTYKAYVYLDEAHSIGAVGKTGRG 314

Query: 132 LTEYYGVPVEKIDIITAAMGHALATEGGFCTGTARIIDHQRLSSSGYTFXXXXXXXXXXX 191
           + E  GV    +DI+      +  + GG+  G+  +I + + +   + +           
Sbjct: 315 VCELLGVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAQQ 374

Query: 192 XITAIDVI 199
            I++I VI
Sbjct: 375 IISSIKVI 382