Jatropha Genome Database

JcCA0078491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0078491.10 - phase: 0 /partial
         (104 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010051001 assembled CDS                                        96   3e-21

>GSVIVT01010051001 assembled CDS
          Length = 246

 Score = 96.3 bits (238), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 67/98 (68%), Gaps = 6/98 (6%)

Query: 7   SVASTAGGARSLPFQRTLAITSTKFLSRWVSSKMDFNFLQLGCRKNTTLPARKLLIRAAR 66
           +VAST  GA  + F RTLA   T F+     SK+ F+ L+L     TT P RKL +RAAR
Sbjct: 5   TVAST--GAYLMQFPRTLAALRTSFIPTRSFSKLGFHPLRL----RTTAPVRKLQVRAAR 58

Query: 67  TESQGVFLGFRPPNFELPEPLTGKTWKLDDFESYPALL 104
           T S+GV LGFR P+FEL EPLTGK W L+DFESYPALL
Sbjct: 59  TGSKGVSLGFRAPHFELQEPLTGKMWTLEDFESYPALL 96