Jatropha Genome Database

JcCA0078121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0078121.10 + phase: 0 /partial
         (164 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010169001 assembled CDS                                       248   8e-67
GSVIVT01031739001 assembled CDS                                       117   2e-27

>GSVIVT01010169001 assembled CDS
          Length = 308

 Score =  248 bits (633), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 122/164 (74%), Positives = 143/164 (87%)

Query: 1   MGFIDHVKSIEWENESYPAYEDYIVLPLFALFFPSVRFFLDRFVFEKVAKRLIFGKGYRT 60
           MG ++   SI WE+ES+P Y D++ LP+FA FF SVRFFLDRFVF+K+ + LIFGKG + 
Sbjct: 1   MGLLESAASINWEHESFPEYGDFVALPVFAFFFFSVRFFLDRFVFQKLGRILIFGKGGQQ 60

Query: 61  LDVETDERKKKIRKFKESAWKCVYFLSGEILALTVTYNEPWFTNTKYFWVGPGNQVWPDQ 120
           LDV  DE++KK+RKFKESAWKCVYFLS E+LAL+VTY+EPWFTNTKYFWVGPGNQVWPDQ
Sbjct: 61  LDVGVDEKRKKLRKFKESAWKCVYFLSAELLALSVTYDEPWFTNTKYFWVGPGNQVWPDQ 120

Query: 121 KMKLKLKGVYMYAAGFYTYSIFALIFWETRRSDFGVTGSHHVAT 164
           ++KLKLKG+YMY  GFYTYSIFALIFWETRRSDFGV+  HHVAT
Sbjct: 121 QIKLKLKGLYMYCGGFYTYSIFALIFWETRRSDFGVSMGHHVAT 164


>GSVIVT01031739001 assembled CDS
          Length = 311

 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 90/161 (55%), Gaps = 8/161 (4%)

Query: 4   IDHVKSIEWENESYPAYEDYIVLPLFALFFPSVRFFLDRFVFEKVAKRLIFGKGYRTLDV 63
           I ++ SI W   +     D++    FA  F   RFFLDRF++ ++A  L+  KG   L  
Sbjct: 21  IPNMDSI-WSRSALSTASDFLTAIYFAFIFIVARFFLDRFIYRRLAIWLL-SKGAVPLK- 77

Query: 64  ETDERKKKIRKFKESAWKCVYFLSGEILALTVTYNEPWFTNTKYFWVGPGNQVWPDQKMK 123
           + D    KI K  ES WK  Y+ + E   L ++Y EPWF ++K ++ G     WP+Q++ 
Sbjct: 78  KNDATLGKIVKCSESLWKLTYYATVEAFILAISYQEPWFRDSKQYFRG-----WPNQELT 132

Query: 124 LKLKGVYMYAAGFYTYSIFALIFWETRRSDFGVTGSHHVAT 164
           L LK  YM   GFY YSI AL+ WETRR DF V  SHHV T
Sbjct: 133 LPLKLFYMCQCGFYIYSIAALLTWETRRRDFSVMMSHHVVT 173