Jatropha Genome Database

JcCA0077581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077581.10 + phase: 0 
         (175 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028640001 assembled CDS                                       108   9e-25
GSVIVT01021078001 assembled CDS                                        69   2e-12

>GSVIVT01028640001 assembled CDS
          Length = 218

 Score =  108 bits (271), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/150 (47%), Positives = 84/150 (56%), Gaps = 22/150 (14%)

Query: 1   MGKYMKKSKITADVAVMELSLSHSQSTTLGVRTRAKTLALQRLHXXXXXXXXXXXXXXXX 60
           MGKYMKK+KIT DV VME+S      ++LGVRTRAKTLALQRL                 
Sbjct: 1   MGKYMKKAKITGDVTVMEVS------SSLGVRTRAKTLALQRLQKTTHQEGPKPDTS--- 51

Query: 61  XYLQLRSRRLEKHPPPLLNGTKKPEIPQQLASNKKLPKGSSRLSKVKAVAGDFEKVEEGE 120
            YL+LRSRRLEK  PPLL+   K + P         PK SSR+      +     V  GE
Sbjct: 52  -YLELRSRRLEK--PPLLSEPNKKQNPN--------PKASSRVELGSVNSNSVGSVPPGE 100

Query: 121 GCFDKKCEAEDLGIEASFGENYLEFESRER 150
                  E ED+G+EAS+GEN LEFE R+R
Sbjct: 101 KI--NAVETEDVGVEASYGENVLEFEGRDR 128


>GSVIVT01021078001 assembled CDS
          Length = 203

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 70/150 (46%), Gaps = 41/150 (27%)

Query: 5   MKKSKITADVAVMELSLSHSQSTTLGVRTRAKTLALQRLHXXXXXXXXXXXXXXXXX--- 61
           M+K+K   +VAVME+S        LGVRTRAKTLAL+RL                     
Sbjct: 1   MRKAKARGEVAVMEVS-----QPCLGVRTRAKTLALERLQKSRPRPSPPQSPPQQQASSS 55

Query: 62  -YLQLRSRRLEKHPPPLLNGTKKPEIPQQLASNKKLPKGSSRLSKVKAVAGDFEKVEEGE 120
            YLQLRSRRL K  PP+L                             + A D  K+ + E
Sbjct: 56  SYLQLRSRRLLK--PPIL-----------------------------SPAVDLLKLGKEE 84

Query: 121 GCFDKKCEAEDLGIEASFGENYLEFESRER 150
              +    A DLGIEASFGEN L+FE+R+R
Sbjct: 85  QILEDN-NANDLGIEASFGENVLDFEARDR 113