Jatropha Genome Database
- JcCA0077561.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0077561.10 - phase: 0
(455 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01015095001 assembled CDS 359 1e-99
GSVIVT01016762001 assembled CDS 287 6e-78
GSVIVT01024326001 assembled CDS 160 1e-39
GSVIVT01009299001 assembled CDS 159 3e-39
GSVIVT01007165001 assembled CDS 140 9e-34
GSVIVT01019913001 assembled CDS 137 1e-32
GSVIVT01033800001 assembled CDS 135 4e-32
GSVIVT01038629001 assembled CDS 133 1e-31
GSVIVT01027535001 assembled CDS 114 1e-25
GSVIVT01019667001 assembled CDS 90 2e-18
>GSVIVT01015095001 assembled CDS
Length = 387
Score = 359 bits (922), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 233/420 (55%), Positives = 270/420 (64%), Gaps = 58/420 (13%)
Query: 1 MSETAKFPFTASQWQELEHQALIFKYMVSGIPIPSDLLFTIKRSCLDSPL-SSKLFP-RQ 58
MS +FPFTA+QWQELEHQALIFKYM SG+PIP DL+F+IKRS LDSPL +SKLFP Q
Sbjct: 2 MSGRNRFPFTATQWQELEHQALIFKYMASGMPIPPDLIFSIKRS-LDSPLPTSKLFPTHQ 60
Query: 59 PSHIGWSCFQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPV 118
HIGW+CFQMGLGRK+DPEPGRCRRTDGKKWRC+KEAYPDSKYCERHMHRG+NRSRKPV
Sbjct: 61 SQHIGWNCFQMGLGRKVDPEPGRCRRTDGKKWRCAKEAYPDSKYCERHMHRGRNRSRKPV 120
Query: 119 EV------------PTQTVTANPSITTQTISSINKNHSSTTTLLGNTXXXXXXXXXXXXE 166
EV PT T+ ANP ISSI N S+ T+ E
Sbjct: 121 EVMTPSKTPPTVTTPTATMAANP---PPPISSITVNSSNPTSY------------SLALE 165
Query: 167 THHQNHHLH-YSAPYHAHLNNHQFL---SSSSRPP---GNIGLSHQDNSTPLLLDSAPGS 219
T QNHH H + + Y+ HL + FL SSSSRPP G + LS Q N+T LLLD S
Sbjct: 166 T--QNHHTHRHPSCYNTHL-HLPFLYPHSSSSRPPGFGGGVELSPQHNTTHLLLD----S 218
Query: 220 GSLTNTADYRKAY--GMKEEVDEHAFFSSEPXXXXXXXXXXXXXDDAWQFTPLTMXXXXX 277
GS + T DYR Y G+KEEVDEHAFFS +P DD W+ TPL M
Sbjct: 219 GSYSQT-DYRNRYVHGLKEEVDEHAFFSEQP-SGATRSFSGSSMDDPWRLTPLKMNSSPL 276
Query: 278 XXXXXXXXXXXXXEYSYLQLHSLSDHDSTPKQQKMYHQRSYLLGNEMKCQPPMKVEREEQ 337
+YS LQL SLSD S KQ + + Y+LG+ +K + K EREE
Sbjct: 277 DHSKQRSCSVLQSDYSCLQLQSLSD-TSNQKQDQHF----YVLGSNLKYE---KHEREE- 327
Query: 338 PQKTVHRFFDEWPPKNKDSWLDLDDKSPNSTSVSTTRLSISIP-SSHDFPIFNSRTHNGN 396
P+KTVHRFFDEWPPK++D W D +DKSP VSTT+LSIS+P SS DF I NSR HNG+
Sbjct: 328 PEKTVHRFFDEWPPKSRDPWPDSEDKSPRDALVSTTQLSISMPNSSFDFSISNSRPHNGS 387
>GSVIVT01016762001 assembled CDS
Length = 363
Score = 287 bits (735), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 199/396 (50%), Positives = 239/396 (60%), Gaps = 45/396 (11%)
Query: 1 MSETAKFPFTASQWQELEHQALIFKYMVSGIPIPSDLLFTIKRSCLDSPLSSKLFPRQPS 60
MS + PFTASQWQELEHQALIFKY+VSG+PIP+DL+ T+KRS S LSS+LFP QP
Sbjct: 3 MSARNRSPFTASQWQELEHQALIFKYIVSGVPIPADLICTVKRSLDSS-LSSRLFPHQP- 60
Query: 61 HIGWSCFQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEV 120
IGW CFQMG GRK DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEV
Sbjct: 61 -IGWGCFQMGFGRKADPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEV 119
Query: 121 PTQTVTANPSITTQTISSINKNHSSTTTLLGNTXXXXXXXXXXXXETHHQNHHLHYSAPY 180
+ T NPS T +I+S SSTTT + ET H +HH +++
Sbjct: 120 ISAT---NPSPTISSINSNP---SSTTTNSYSLSPLSPLSSSMTSETSHPHHHSYHNTSL 173
Query: 181 HAHLNNHQFLSSSSRPPGNIGLSHQDNST----PLLLDSAPGSGSLTNTADYRKAYGMKE 236
+ L H SSSRPPG+ LS Q S+ L LDS GS S + DYR +GM+E
Sbjct: 174 YPFLYPH---PSSSRPPGSC-LSPQATSSYSTHHLFLDS--GSYSQADR-DYRHHHGMRE 226
Query: 237 EVDEHAFFSSEPXXXXXXXXXXXXXDDAWQFTPLTMXXXXXXXXXXXXXXXXXXEYSYLQ 296
VDE AFF +TPLTM YS+ Q
Sbjct: 227 GVDERAFFPEASGTVRGLHD---------SYTPLTMSSSKG--------------YSHFQ 263
Query: 297 LHSLSDHDSTPKQQKMYHQRSYLLGNEMKCQPPMKVEREEQPQKTVHRFFDEWPPKNKDS 356
S +D + +Q++ Q ++LG + K P+KVER+ + QK +H FF EWP KN+DS
Sbjct: 264 YQSPAD-NPKQQQEQQEQQHCFVLGTDFKSSRPIKVERDGEAQKPLHHFFGEWPLKNRDS 322
Query: 357 WLDLDDKSPNSTSVSTTRLSISIP-SSHDFPIFNSR 391
WLDL++ P S STT+LSISIP SSH +SR
Sbjct: 323 WLDLEEDPPTHASFSTTQLSISIPMSSHKLLASDSR 358
>GSVIVT01024326001 assembled CDS
Length = 373
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 92/112 (82%), Gaps = 7/112 (6%)
Query: 8 PFTASQWQELEHQALIFKYMVSGIPIPSDLLFTIKRSCLDSPLSSKLFPRQPSHIGWSCF 67
PFT SQWQELEHQALIFKY+++G+P+P DL+ I++S +SS+ F P+ +G+ F
Sbjct: 66 PFTVSQWQELEHQALIFKYLMAGLPVPPDLVLPIQKSFES--MSSRFF-HHPT-MGYCSF 121
Query: 68 QMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 119
G+K+DPEPGRCRRTDGKKWRCSK+AYPDSKYCERHMHRG+NRSRKPVE
Sbjct: 122 ---YGKKVDPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVE 170
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 75/171 (43%), Gaps = 32/171 (18%)
Query: 227 DYRKAYGMKEEVDEHAFFSSEPXXXXXXXXXXXXXDDAWQFTPLTMXXXXXXXXXXXXXX 286
DYR +G+K EV EH+FFS E D W P +
Sbjct: 234 DYRYLHGLKPEVGEHSFFS-EASGSNRGLQMDSPLDSTWPLMPSRVSSFPPSKSS----- 287
Query: 287 XXXXEYSYLQLHSLSDHDSTPKQQKMYHQRSYLLGNEMKCQPPMKVEREEQPQKTVHRFF 346
E S LQ SD+ Q + + G +K Q +++ FF
Sbjct: 288 ----ENSILQ----SDYP-----QHSFFSSEFASGEVVK-----------QEGQSLRPFF 323
Query: 347 DEWPPKNKDSWLDLDDKSPNSTSVSTTRLSISIP-SSHDFPIFNSRTHNGN 396
DEWP K +DSW L+++ N TS STT+LSISIP +S DF +SR+ + N
Sbjct: 324 DEWP-KTRDSWSGLEEERSNQTSFSTTQLSISIPMASSDFSTTSSRSPHDN 373
>GSVIVT01009299001 assembled CDS
Length = 475
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/191 (45%), Positives = 109/191 (57%), Gaps = 12/191 (6%)
Query: 5 AKFPFTASQWQELEHQALIFKYMVSGIPIPSDLLFTIKRSCLDSPLSSKLFPR--QPSHI 62
+ PFT SQW ELEHQALI+KY+ + +PIPS+LL I R LDS S +P+ +
Sbjct: 56 VRGPFTQSQWMELEHQALIYKYITANVPIPSNLLMPI-RKALDSVGFSTFSAGALRPNTL 114
Query: 63 GWSCFQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVPT 122
GW F +G DPEPGRCRRTDGKKWRCS++A D KYCERHM+RG++RSRKPVE T
Sbjct: 115 GWGSFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEGQT 174
Query: 123 QTVTANPSITTQTISSINKNHSSTTTLLGNTXXXXXXXXXXXXETHHQNHHLHYSA--PY 180
P+ T + I + S++ G T HHQ +LH A P
Sbjct: 175 GHSVPGPTTTATKLMPITSSSSASVVPGGGTSNSLAI-------AHHQIKNLHPGASNPS 227
Query: 181 HAHLNNHQFLS 191
A N FL+
Sbjct: 228 AATPINRIFLN 238
>GSVIVT01007165001 assembled CDS
Length = 558
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 87/128 (67%), Gaps = 3/128 (2%)
Query: 5 AKFPFTASQWQELEHQALIFKYMVSGIPIPSDLLFTIKRSCLDSPLSSKLFPRQPSH--I 62
+ PFT SQW ELEHQALI+KY+ + +P+PS+LL I++S L+ S +H +
Sbjct: 163 VRGPFTPSQWIELEHQALIYKYITANVPVPSNLLIPIRKS-LNPFGLSGSSSTSLAHNSL 221
Query: 63 GWSCFQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVPT 122
W F +G DPEPGRCRRTDGKKWRCS++A D KYCERH++RG++RSRKPVE T
Sbjct: 222 SWGSFHLGFSGNTDPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEGQT 281
Query: 123 QTVTANPS 130
+ P+
Sbjct: 282 GHAVSGPT 289
>GSVIVT01019913001 assembled CDS
Length = 212
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 92/150 (61%), Gaps = 11/150 (7%)
Query: 9 FTASQWQELEHQALIFKYMVSGIPIPSDLLFTIKRS--CLDSPLSSKLFPRQPSHIGWSC 66
FT Q QELEHQALI+KYM +G+P+P L++ I +S C L++ + P +G S
Sbjct: 41 FTFLQLQELEHQALIYKYMEAGLPVPYHLVYPIWKSVACSLVGLTAGAYQHHPGFLGLSP 100
Query: 67 FQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVPTQTV- 125
+ +DPEPGRCRRTDGKKWRCSKEA PD KYCERHMHRG+ RSRK VE
Sbjct: 101 LYLDYKNSMDPEPGRCRRTDGKKWRCSKEAVPDQKYCERHMHRGRQRSRKHVEASQLGAR 160
Query: 126 --------TANPSITTQTISSINKNHSSTT 147
T ++T+ T SI+ SSTT
Sbjct: 161 TATSALNNTVRDAVTSNTNLSISLPVSSTT 190
>GSVIVT01033800001 assembled CDS
Length = 391
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 86/124 (69%), Gaps = 3/124 (2%)
Query: 2 SETAKFPFTASQWQELEHQALIFKYMVSGIPIPSDLLFTIKRSCLDSPLSSKLFPRQP-S 60
S+T F+ +QWQELE QALIF++M++G +P +LL IK+S L+ P P Q
Sbjct: 43 SKTGGSYFSLAQWQELELQALIFRHMLAGAAVPPELLQLIKKSLLNHPPYYLQHPLQHYQ 102
Query: 61 HIGWSCFQMGL-GRK-IDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPV 118
H + Q G GR +DPEPGRCRRTDGKKWRCS++ KYCERHMHRG+NRSRKPV
Sbjct: 103 HYQPALLQSGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVTGQKYCERHMHRGRNRSRKPV 162
Query: 119 EVPT 122
E+PT
Sbjct: 163 EIPT 166
>GSVIVT01038629001 assembled CDS
Length = 603
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 81/115 (70%), Gaps = 7/115 (6%)
Query: 7 FPFTASQWQELEHQALIFKYMVSGIPIPSDLLFTIKRSCLDSPLSSKLFPRQPSHIG-WS 65
FPFT++QW+ELE QA+I+KY+++ +P+P +LL I R+ +S S S +G S
Sbjct: 127 FPFTSAQWKELERQAMIYKYIMASVPVPPELLMPITRNFSESAASPH------STLGRGS 180
Query: 66 CFQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEV 120
F + DPEPGRCRRTDGKKWRCS++ + KYCERHMHRG+ RSRKPVEV
Sbjct: 181 IFNLRFSNGADPEPGRCRRTDGKKWRCSRDVALNQKYCERHMHRGRPRSRKPVEV 235
>GSVIVT01027535001 assembled CDS
Length = 402
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 67/97 (69%), Gaps = 2/97 (2%)
Query: 27 MVSGIPIPSDLLFTIKRSCLDSPLSSK--LFPRQPSHIGWSCFQMGLGRKIDPEPGRCRR 84
MV+G+P+P L+ I +S S S+ ++ + PS IG+S +DPEPGRCRR
Sbjct: 1 MVAGLPVPVHLVLPIWKSVASSFGSTDGGIYKQYPSFIGFSPQGFDYRNVMDPEPGRCRR 60
Query: 85 TDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVP 121
TDGKKWRCSK+ PD KYCERHMHRG+ RSRKPVE P
Sbjct: 61 TDGKKWRCSKDVVPDQKYCERHMHRGRQRSRKPVEAP 97
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 13/86 (15%)
Query: 76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVPTQTVTAN------- 128
+PEPGRCRRTDGKKWRCS++ PD KYC RHMHRG ++K V V +Q+V +
Sbjct: 298 EPEPGRCRRTDGKKWRCSRDVVPDQKYCVRHMHRG---AKKHVGV-SQSVAVSAAIHSNC 353
Query: 129 --PSITTQTISSINKNHSSTTTLLGN 152
P+I +T SIN N + + ++ N
Sbjct: 354 RPPTIPNKTRISINLNTNLSISIPAN 379
>GSVIVT01019667001 assembled CDS
Length = 352
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 59/98 (60%), Gaps = 10/98 (10%)
Query: 28 VSGIPIPSDLLFTIKRSCLDSPLSSKLFPRQPSHIGWSCFQMGLGRKIDPEPGRCRRTDG 87
++ +PIP +LL I RS D SH S + DPEP RCRRTDG
Sbjct: 1 MASVPIPPELLIPISRSLSDV---------TASHSNRS-LDLRFPNSSDPEPWRCRRTDG 50
Query: 88 KKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVPTQTV 125
KKWRCS++ PD KYCERH H+G+ RSRKPVE+ ++ +
Sbjct: 51 KKWRCSRDVAPDQKYCERHTHKGRPRSRKPVELHSELI 88