Jatropha Genome Database

JcCA0077471.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077471.20 + phase: 0 
         (113 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008590001 assembled CDS                                       174   7e-45
GSVIVT01033043001 assembled CDS                                       166   3e-42
GSVIVT01010987001 assembled CDS                                       124   1e-29
GSVIVT01008972001 assembled CDS                                       114   7e-27
GSVIVT01011498001 assembled CDS                                       112   5e-26

>GSVIVT01008590001 assembled CDS
          Length = 117

 Score =  174 bits (441), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 79/96 (82%), Positives = 91/96 (94%)

Query: 5   DLVDLKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINSGKIL 64
           DLVD+KFRLYDGSD+GPFRYSS STVDMLK+R+VSDWPKGKT+ PKA NEVKLI+SGKIL
Sbjct: 4   DLVDIKFRLYDGSDVGPFRYSSTSTVDMLKERVVSDWPKGKTIIPKAANEVKLISSGKIL 63

Query: 65  DNNKTLGQCRTPFGEAAGGVIIMHVVVQPSLAKSKT 100
           +N+KT+GQCR PFGE AGGV++MHVVVQPSLAK+KT
Sbjct: 64  ENDKTVGQCRIPFGELAGGVLVMHVVVQPSLAKTKT 99


>GSVIVT01033043001 assembled CDS
          Length = 118

 Score =  166 bits (419), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 77/100 (77%), Positives = 88/100 (88%)

Query: 1   MPEEDLVDLKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINS 60
           MPEEDLV+LKFRLYDGSDIGPFRYS  STV MLK+RIV++WPK K + PKA N+VKLI++
Sbjct: 1   MPEEDLVELKFRLYDGSDIGPFRYSPTSTVAMLKERIVTEWPKEKKIAPKAANDVKLISA 60

Query: 61  GKILDNNKTLGQCRTPFGEAAGGVIIMHVVVQPSLAKSKT 100
           GKIL+NNKT+GQCR PFGE   GVI MHVVVQPSLAK+KT
Sbjct: 61  GKILENNKTVGQCRVPFGELPRGVITMHVVVQPSLAKAKT 100


>GSVIVT01010987001 assembled CDS
          Length = 119

 Score =  124 bits (310), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 78/97 (80%)

Query: 4   EDLVDLKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINSGKI 63
           E+ ++LKFR+YDG+DIG   Y+S++TV  LKQR+V++WP  KTV PK+VN++KLI++GK+
Sbjct: 5   EEHIELKFRIYDGTDIGHRTYASSTTVATLKQRLVAEWPPDKTVIPKSVNDMKLIHAGKV 64

Query: 64  LDNNKTLGQCRTPFGEAAGGVIIMHVVVQPSLAKSKT 100
           L+N+KTL + R  FG+   GVI MHVVVQP +AK KT
Sbjct: 65  LENSKTLAESRITFGDLPSGVITMHVVVQPPVAKKKT 101


>GSVIVT01008972001 assembled CDS
          Length = 118

 Score =  114 bits (286), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 53/100 (53%), Positives = 74/100 (74%)

Query: 1   MPEEDLVDLKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINS 60
           M  E+L++LKFRL DG+DIGP +Y+  ++V  LK++I++ WPK K   PK +N++KLIN+
Sbjct: 1   MAGEELIELKFRLADGTDIGPNKYNPTTSVGSLKEKILAQWPKDKENGPKTINDMKLINA 60

Query: 61  GKILDNNKTLGQCRTPFGEAAGGVIIMHVVVQPSLAKSKT 100
           GKIL+NN+TL + R   GE  GGVI MHVVV+P L+   T
Sbjct: 61  GKILENNRTLAESRLLVGELPGGVITMHVVVRPPLSDKNT 100


>GSVIVT01011498001 assembled CDS
          Length = 117

 Score =  112 bits (279), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 70/90 (77%)

Query: 4  EDLVDLKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINSGKI 63
          +D +++KFRL DGSDIGP  +S+A++V  LK+ +++ WPK K   PK V +VKLI++GKI
Sbjct: 5  QDQLEIKFRLTDGSDIGPKSFSAATSVATLKENVLAQWPKEKENGPKTVKDVKLISAGKI 64

Query: 64 LDNNKTLGQCRTPFGEAAGGVIIMHVVVQP 93
          L+NN+T+G+CR+P  +  GGV  MHVVVQP
Sbjct: 65 LENNRTIGECRSPLCDIPGGVTTMHVVVQP 94