Jatropha Genome Database

JcCA0077471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077471.10 - phase: 0 
         (88 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008591001 assembled CDS                                       131   5e-32

>GSVIVT01008591001 assembled CDS
          Length = 374

 Score =  131 bits (330), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 55/64 (85%), Positives = 61/64 (95%)

Query: 13 MEIVWQTPANPPEKQDYIIRDGRRHVRPYHFEFISHVKNRWAGKTIVDLFAEEFKGRPYE 72
          MEIVWQTPANPPE+ DYI R+G+RHVRPY+FEFISHVKNRWAGKTIVDLF EEFKGRPY+
Sbjct: 1  MEIVWQTPANPPERHDYIFRNGKRHVRPYYFEFISHVKNRWAGKTIVDLFTEEFKGRPYD 60

Query: 73 YYVS 76
          YYV+
Sbjct: 61 YYVN 64