Jatropha Genome Database

JcCA0077451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077451.10 - phase: 0 /pseudo
         (556 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008831001 assembled CDS                                       469   e-132
GSVIVT01031951001 assembled CDS                                       134   1e-31
GSVIVT01013428001 assembled CDS                                        94   2e-19
GSVIVT01008584001 assembled CDS                                        86   4e-17
GSVIVT01030077001 assembled CDS                                        65   6e-11
GSVIVT01003479001 assembled CDS                                        62   8e-10

>GSVIVT01008831001 assembled CDS
          Length = 675

 Score =  469 bits (1207), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/339 (67%), Positives = 266/339 (78%), Gaps = 31/339 (9%)

Query: 188 SGKSPDHTPEKYMECRNYLVAKYMDNPEKRITVSDFQGVVFGIDNEDLTRIVRFLDHWGI 247
           SGKSPDHT E YMECRN +VAKYM++PEKR++VSD +G+V GI  EDLTRIVRFLDHWGI
Sbjct: 87  SGKSPDHTAELYMECRNLIVAKYMEDPEKRLSVSDCKGLVAGIQEEDLTRIVRFLDHWGI 146

Query: 248 INYCAAP-PNRESWNGGSYLREDPNGEVHVPSAALKSIDSLIKFDKPTCRLKVADLYSSL 306
           INYCA+  PNRE W+  SYLRED NGEVHVPSAALKSIDSLIKFDKP CRLK A++YSSL
Sbjct: 147 INYCASSVPNREPWSSTSYLREDSNGEVHVPSAALKSIDSLIKFDKPKCRLKAAEVYSSL 206

Query: 307 PCHDADFSDLDNKIRERLSENHCTYCSQPLPGIYYQSQKEIDVLLCSDCFHEGRFVTGHS 366
            C+  + SDLD KIRERLS+N C YCS+PLP  YYQSQKE+DV+LC+DCF+EGRFVTGHS
Sbjct: 207 SCNGDEDSDLDCKIRERLSDNRCNYCSRPLPIGYYQSQKEVDVMLCTDCFYEGRFVTGHS 266

Query: 367 TLDFIKMDPTKDYGDLDGESWSDQETLLLLEAMEIYNENWNEIAEHVGTKSKSQCILHFL 426
           ++DFI++D TKDYGD+D ESWSDQETLLLLEAME YNENWN+IAEHVGTKSK+QCILHF+
Sbjct: 267 SIDFIRLDSTKDYGDIDSESWSDQETLLLLEAMESYNENWNDIAEHVGTKSKAQCILHFI 326

Query: 427 RLPMEDGLLENIEVPSMPNSSNLSSRDDHGRIHLHSNGDLPXXXXXXXXXXXXXXXDYVI 486
           R+PMEDGLLENIEVPSMP  SN  ++ D  R H +SNG+L                    
Sbjct: 327 RMPMEDGLLENIEVPSMPTLSNSLNKVDQERSHSNSNGNL-------------------- 366

Query: 487 VTFICFPMLSAGSSCQDADSESRIPFANSGNPVMALVCL 525
                     AGS     DS+SR+PFANSGNPVM++V  
Sbjct: 367 ----------AGSCLPGLDSDSRLPFANSGNPVMSMVAF 395


>GSVIVT01031951001 assembled CDS
          Length = 983

 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/259 (35%), Positives = 138/259 (53%), Gaps = 24/259 (9%)

Query: 188 SGKSPDHTPEKYMECRNYLVAKYMDNPEKRITVSDFQGVVFGIDNEDLTRIVRFLDHWGI 247
           +GKS +  P+ Y + R++++ ++  NP  +I V D   +  G D +    ++ FLD+WG+
Sbjct: 155 NGKSENRNPDMYKQIRDWIIKRFHGNPNTQIEVKDLSELEIG-DLDARQEVMEFLDYWGL 213

Query: 248 INYCAAPPNRESWNGGSYLREDPNGEVHVPSAALKSIDSLIKFDK--------PTCRLKV 299
           IN+    P   S           NG+         S++ L +FD         P   +  
Sbjct: 214 INFHPFLPAESSVA---------NGDDDTAKQLDSSVEKLYRFDMVQSCPPVVPKANMSA 264

Query: 300 ADLYSSLPCHDADFSDLDNKIRERLS--ENHCTYCSQPLPGIYYQSQKEIDVLLCSDCFH 357
             + S L    A   +L   +R      E HC  CS       Y  QK+ D  LC++CF+
Sbjct: 265 PTMASGLFPESAFVEEL---VRSEGPSVEYHCNSCSADCSRKRYHCQKQADFDLCTECFN 321

Query: 358 EGRFVTGHSTLDFIKMDPTKDYGDLDGESWSDQETLLLLEAMEIYNENWNEIAEHVGTKS 417
             +F +  S+ DFI M+P +  G + G  W+DQETLLLLEA+E+Y ENWNEIAEHV TK+
Sbjct: 322 NQKFGSDMSSSDFILMEPAEAPG-VSGGKWTDQETLLLLEALELYKENWNEIAEHVATKT 380

Query: 418 KSQCILHFLRLPMEDGLLE 436
           K+QCILHF+++P+ED  ++
Sbjct: 381 KAQCILHFVQMPIEDTFID 399


>GSVIVT01013428001 assembled CDS
          Length = 492

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 132/285 (46%), Gaps = 44/285 (15%)

Query: 173 SNASEVEFMWFQCIQSGKSPDHTPEKYMECRNYLVAKYMDNPEKRITVSDFQGVVFGIDN 232
           +N  E E  +       +SP   P  Y   RN ++  +  NP +++T +D + ++ G D 
Sbjct: 70  NNVHECEVRFLPEFFDARSPSKNPRVYKYYRNSIILSFRQNPSRKLTFTDVRKILVG-DV 128

Query: 233 EDLTRIVRFLDHWGIINYCAAPPNRESWNGGSYLREDPNGEVHVPSAALKSIDSLIKFDK 292
             + R+  FL+ WG+INY            GS L++                   +K+++
Sbjct: 129 GSIRRVFDFLEAWGLINYS-----------GSALKQP------------------LKWEE 159

Query: 293 PTCRLKVADLYSSLPCHDADFSDLDNKIRERLSENHCTYCSQPLPGIYYQSQKEIDVLLC 352
              +   A  ++     DA    +++  + R     C+ C + L  I   +  + D+ LC
Sbjct: 160 KDNKSGGASSHTG----DAGGGAVESIPKRRW----CSGC-KSLCSIACFACDKFDLTLC 210

Query: 353 SDCFHEGRFVTGHSTLDFIKMDPTKDYGDLDGESWSDQETLLLLEAMEIYNENWNEIAEH 412
           + C+  G +  G ++ DF +++ ++D        W+D+ETL LLEA+  Y ++W ++AEH
Sbjct: 211 ARCYVRGNYRVGVNSSDFRRVEISEDTK----AGWTDKETLHLLEAVLHYGDDWKKVAEH 266

Query: 413 VGTKSKSQCILHFLRLPMEDGLLENIEVPSMPNS-SNLSSRDDHG 456
           VG +++ +C+ HF++L   +  L +     + N  S    + D G
Sbjct: 267 VGGRNEKECVTHFIKLSFGEQYLGHTSSGDVDNKFSQAKDQSDAG 311


>GSVIVT01008584001 assembled CDS
          Length = 563

 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 139/291 (47%), Gaps = 32/291 (10%)

Query: 177 EVEFMWFQCIQSGKSPDHTPEKYMECRNYLVAKYMDNPEKRITVSDFQGVVFGIDNEDLT 236
           E E +  +    G S   TP+ Y E R+++++KY ++P +R+T ++ +  + G D   L 
Sbjct: 38  EKEKISLKEFFDGSSISRTPKIYKEYRDFIISKYREDPSRRLTFAEIRKSLVG-DVSLLH 96

Query: 237 RIVRFLDHWGIINYCAAPPNRESW---NGGSYLR---ED--PNG--EVHVPSAALKSI-- 284
           ++  FL+ WG+IN+  AP   +S     G    R   ED  PNG   V +P++ LK I  
Sbjct: 97  KVFLFLERWGLINF-GAPGGEDSAAVAEGAERHRVRSEDGAPNGIRVVAMPNS-LKPITM 154

Query: 285 ----DSLIKFDKPTCRLKVADLYSSLPCHDADFSDLDNKIRERLSENHCTYCSQPLPGIY 340
               D   + D+   RL     YS +      FSDL  K +  +    C  C       +
Sbjct: 155 PLTLDVNGEVDENGFRLPPLASYSDV------FSDL-TKEKGLV----CGNCGDNCDSGH 203

Query: 341 YQSQKEIDVLLCSDCFHEGRFVTGHSTLDFIKMDPTKDYGDLDGESWSDQETLLLLEAME 400
           Y   K   V+ C  CF  G +    S  DF   D  ++ G+  G  W++ ETLLLLE++ 
Sbjct: 204 YNCLKGSPVI-CVKCFKNGNYGENRSVDDFKFNDCNENRGNR-GAVWTEAETLLLLESVL 261

Query: 401 IYNENWNEIAEHVGTKSKSQCILHFLRLPMEDGLLENIEVPSMPNSSNLSS 451
            + ++W  + ++V TK+K  CI   + LP  + +L +    S  ++ N SS
Sbjct: 262 KHGDDWELVVQNVQTKTKLDCISKLIELPFGELMLGSSLGKSRASNDNTSS 312


>GSVIVT01030077001 assembled CDS
          Length = 291

 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 3/105 (2%)

Query: 328 HCTYCSQPLPG-IYYQSQKEIDVLLCSDCFHEGRFVTGHSTLDFIKMDPTKDYGDLDGES 386
           HC YCS+ + G I  +     D  LC +CF  G  VT H      ++     +  L    
Sbjct: 50  HCNYCSKDISGKIRTKCVVCPDFDLCIECFSIGAEVTPHVCFHPYRVMDNLSF-PLICPD 108

Query: 387 WSDQETLLLLEAMEIYN-ENWNEIAEHVGTKSKSQCILHFLRLPM 430
           W+  E +LLLE +E+Y   NW+E++EHVGTK KS+CI H++ + M
Sbjct: 109 WNADEEMLLLEGIEMYGLGNWSEVSEHVGTKRKSECIDHYVAIYM 153


>GSVIVT01003479001 assembled CDS
          Length = 539

 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 17/112 (15%)

Query: 328 HCTYCSQPLPG-IYYQSQKEIDVLLCSDCFHEGRFVTGHSTLDFIKMDPTKDYGDLDGES 386
           HC YC++ + G I  +     D  LC +CF  G  VT H +           Y  +D  S
Sbjct: 49  HCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGAEVTSHKS--------NHPYRVMDNLS 100

Query: 387 -------WSDQETLLLLEAMEIYN-ENWNEIAEHVGTKSKSQCILHFLRLPM 430
                  W+  + +LLLE +E+Y   NW E+AEHVGTK+K  CI H+  + M
Sbjct: 101 FPLICPDWNADDEILLLEGIEMYGLGNWTEVAEHVGTKTKEPCIEHYANVYM 152