Jatropha Genome Database

JcCA0077401.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077401.20 - phase: 1 /pseudo/partial
         (208 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015151001 assembled CDS                                        47   6e-06

>GSVIVT01015151001 assembled CDS
          Length = 280

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 27  ESGKPSKKKRKLDESRSDGTGQKXXXXXXXXXXX-XVVQAERTKAEEMESQLKKAKQNGL 85
           ES +   KKRKLD S ++G  +K             V+Q ER +AEE   Q+KKAK    
Sbjct: 137 ESTQNGNKKRKLDASDNNGDRKKVGGDASGELGNGEVIQVERAEAEETVLQVKKAKH--- 193

Query: 86  KDDRVVESGSXXXXXXXXXXXXXXXXXXXXXNPDGXXXXXXXXXXXXXSIQECGITEDES 145
             D   E  S                     NPDG             +++E GIT+DE+
Sbjct: 194 --DVSKEPSSMKEDTKKKIKWKKLITSALKSNPDGVLKMRKLRKLVIKALEESGITDDET 251

Query: 146 QFSEMLEQK 154
           Q SE LE K
Sbjct: 252 QLSEKLEHK 260