Jatropha Genome Database

JcCA0077401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077401.10 + phase: 0 
         (114 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015152001 assembled CDS                                       176   2e-45
GSVIVT01016819001 assembled CDS                                       115   3e-27
GSVIVT01036215001 assembled CDS                                        99   4e-22

>GSVIVT01015152001 assembled CDS
          Length = 140

 Score =  176 bits (445), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 80/97 (82%), Positives = 89/97 (91%)

Query: 1   MVKSASDKHIDLLRPSARYYSASKGQALDAADREKGKYTLLRDPEEFQVGMYDKPLPCFG 60
           + KS SDKH+DLLRPS+RYYS  KGQA+DA DREKGKYTLLRD E+FQVG++DKPLPCFG
Sbjct: 18  LTKSISDKHLDLLRPSSRYYSIFKGQAVDAVDREKGKYTLLRDVEDFQVGIFDKPLPCFG 77

Query: 61  CGVGWFSFLLGFVFPLMWYYATILYFGNYYRKDPRER 97
           CG+GWFSFLLGF+ PLMWYYATILYFGN YRKDPRER
Sbjct: 78  CGIGWFSFLLGFLCPLMWYYATILYFGNCYRKDPRER 114


>GSVIVT01016819001 assembled CDS
          Length = 105

 Score =  115 bits (289), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 59/75 (78%)

Query: 23 SKGQALDAADREKGKYTLLRDPEEFQVGMYDKPLPCFGCGVGWFSFLLGFVFPLMWYYAT 82
          + G + D  + + G Y LL+D E   +G+YDKPLPCFGCG+GWFS LLGF FPLMWYYAT
Sbjct: 5  NAGLSTDGKEYQNGDYILLKDDENPNLGVYDKPLPCFGCGIGWFSLLLGFAFPLMWYYAT 64

Query: 83 ILYFGNYYRKDPRER 97
          ILYF NYY+KDPRER
Sbjct: 65 ILYFCNYYQKDPRER 79


>GSVIVT01036215001 assembled CDS
          Length = 117

 Score = 99.0 bits (245), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 54/66 (81%), Gaps = 3/66 (4%)

Query: 34 EKGKYTLLRDPEE--FQVGMYDKPLPCFGCGVGWFSFLLGFVFPLMWYYATILYFGNYYR 91
          E+G ++LL DP       G+YDKPL CFGCG+GWFSFL+GFVFP +WYYAT+LYFGNYY 
Sbjct: 26 ERGAFSLL-DPVTGGLSGGLYDKPLLCFGCGIGWFSFLMGFVFPPLWYYATVLYFGNYYH 84

Query: 92 KDPRER 97
          KDPRER
Sbjct: 85 KDPRER 90