Jatropha Genome Database

JcCA0077211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077211.10 - phase: 0 /partial
         (250 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003838001 assembled CDS                                       285   1e-77
GSVIVT01015228001 assembled CDS                                        82   2e-16
GSVIVT01003478001 assembled CDS                                        55   4e-08
GSVIVT01014639001 assembled CDS                                        54   6e-08

>GSVIVT01003838001 assembled CDS
          Length = 302

 Score =  285 bits (729), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/193 (80%), Positives = 165/193 (85%), Gaps = 4/193 (2%)

Query: 52  MGFSKP----DSEFVVSPGDSGDPIWDAVREEAKLEAEKEPILSSFLYASILSHDRLEQA 107
           MG SK     D    +     GDPIWDAVREEAKLEAEKEPILSSFLYASILSHD LEQA
Sbjct: 1   MGLSKANVGGDVSLEILDSIVGDPIWDAVREEAKLEAEKEPILSSFLYASILSHDCLEQA 60

Query: 108 LAFVLANRLQNPTLLATQLLDIISHVIMHDRRIKHSIRLDMQAFKDRDPACLSYCSTLLY 167
           LAFVLANRL N TLLATQL+DII  VI++DR I+ +IRLDMQAFKDRDP+CLS+CS LLY
Sbjct: 61  LAFVLANRLHNLTLLATQLMDIIGKVILNDRDIQRAIRLDMQAFKDRDPSCLSHCSVLLY 120

Query: 168 LKGYHSLQSYRVAHVLWNQGRKILALALQSRISEVFGIDIHPAAKIGEGILLDHGTGVVI 227
           LKGYHSLQSYRVAH LWN GRK LALALQSRISEVFG+DIHPAA+IGE ILLDH TGVVI
Sbjct: 121 LKGYHSLQSYRVAHALWNHGRKELALALQSRISEVFGVDIHPAAQIGEEILLDHATGVVI 180

Query: 228 GETAVVGNRVSLM 240
           GETAVVGNRVSLM
Sbjct: 181 GETAVVGNRVSLM 193


>GSVIVT01015228001 assembled CDS
          Length = 209

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 18/171 (10%)

Query: 72  IWDAVREEAKLEAEKEPILSSFLYASILSHDRLEQALAFVLANRLQNPTLLATQLLDIIS 131
           +W  ++ EA+ +AE EP L+S+LY++ILSH  LE++L+F L N+L + TLL+T L D+  
Sbjct: 24  LWTQIKAEARRDAESEPALASYLYSTILSHSSLERSLSFHLGNKLCSSTLLSTLLYDLFL 83

Query: 132 HVIMHDRRIKHSIRLDMQAFKDRDPACLSYCSTLLYLKGYHSLQSYRVAHVLWNQGRKIL 191
                D  ++ +   D++A   RDPAC+S    LL    + S +   +       GR   
Sbjct: 84  DTFSKDAELRSATVADLRANHMRDPACVS--RGLLTCSRWISTRRRGL-------GRGFF 134

Query: 192 ALALQSRISEVFGIDIHPAAKIGEG--ILLDHGTGVVIGETAVVGNRVSLM 240
            +   + I  +  I I   AKIG G  +L+D     V   T  VGN   L+
Sbjct: 135 LIGAGATI--LGNIKIGEGAKIGAGSVVLID-----VPARTTAVGNPARLV 178


>GSVIVT01003478001 assembled CDS
          Length = 225

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 29/98 (29%)

Query: 161 YCSTLLYLKGYHSLQSYRVAHVLWNQGRKILALALQSRISEVFGI--------------- 205
           YCS++L    + SL+S  VAH LW+QGR ++AL +QSR+SE   I               
Sbjct: 103 YCSSILQ---HDSLESALVAHKLWSQGRIVMALLIQSRVSETAVIGDNVTILHNVTLGGT 159

Query: 206 -----DIHPAAKIGEGILLDHGTGVV----IGETAVVG 234
                D HP  K+G+G+L+  GT V+    +G+ A +G
Sbjct: 160 GKVNGDRHP--KVGDGVLIGAGTKVLGSIRVGDRAKIG 195


>GSVIVT01014639001 assembled CDS
          Length = 274

 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 10/64 (15%)

Query: 171 YHSLQSYRVAHVLWNQGRKILALALQSRISEVFGIDIHPAAKIGEGILLDH-----GTGV 225
           + SL+++RVAH LW+QGRKILAL +Q+R+SE F       A IG+ + + H     GTG 
Sbjct: 129 HKSLETHRVAHRLWSQGRKILALVIQNRVSEAFA-----TAVIGDDVSILHNVTLGGTGK 183

Query: 226 VIGE 229
           V G+
Sbjct: 184 VSGD 187