Jatropha Genome Database

JcCA0077011.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077011.20 - phase: 0 /pseudo/partial
         (85 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01005452001 assembled CDS                                        70   3e-13

>GSVIVT01005452001 assembled CDS
          Length = 131

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 37/47 (78%)

Query: 1   RYLEDGPDAAELQLGSGFPTGMGTGDSYLGAHHDLHARPARPHEV*R 47
           R LEDGPDAAE + GSGFPTG GTGD +L AHHDL ARPARP +  R
Sbjct: 78  RCLEDGPDAAERRPGSGFPTGRGTGDGHLEAHHDLQARPARPGKATR 124