Jatropha Genome Database

JcCA0076481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076481.10 + phase: 0 
         (275 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020018001 assembled CDS                                       401   e-112
GSVIVT01000223001 assembled CDS                                       313   4e-86

>GSVIVT01020018001 assembled CDS
          Length = 280

 Score =  401 bits (1031), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/264 (73%), Positives = 221/264 (83%), Gaps = 1/264 (0%)

Query: 1   MASNIGMMDSAYFVGRNEILTWINNRLQLNLTRIEEAASGAVQCQMMDMTYPGVVPMHKV 60
           MA++IGMMD+AYFVGR EIL+WIN  L LNL+++EEAASGAVQCQMMDM +PGVVPMHKV
Sbjct: 1   MAASIGMMDAAYFVGRGEILSWINATLHLNLSKVEEAASGAVQCQMMDMIHPGVVPMHKV 60

Query: 61  NFDAKTEYDMIQNYKVLQEVFNKLKIEKHIEVNRLVKGRPLDNLEFLQWLKRYCDSINGG 120
           NFDAKTEYDMIQNYK+LQEVFNKLKIEKHIEVN+LVKGRPLDNLEFLQWLKRYCDS+NGG
Sbjct: 61  NFDAKTEYDMIQNYKILQEVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSMNGG 120

Query: 121 IMNENYNPVERRIKGGKDRNSKGCPKTSKSLQSNIMHNSASGEPVGLSKTSGPKPXXXXX 180
           IMNENYNPVERR KGGK+RN KG  K+SKSLQ+N + N  S   + + ++SGPK      
Sbjct: 121 IMNENYNPVERRCKGGKERNIKGSYKSSKSLQANNLSN-VSDNGICIDESSGPKGRHKSE 179

Query: 181 XXXXXXXXXEIETLSKEITDLKLSVDHLEKERDFYFAKLRDIEILCQTPELEDIPMAVAI 240
                    EI+ L +EI DLKLSVD LEKERDFYF KLRDIEILCQTPE+ED+PM++AI
Sbjct: 180 MSGGANSVGEIQGLCQEIADLKLSVDDLEKERDFYFGKLRDIEILCQTPEVEDLPMSMAI 239

Query: 241 KKILYAADAKESALEEAQEYLNQA 264
           KKILYA DAK SAL EAQE + ++
Sbjct: 240 KKILYAVDAKVSALGEAQEIITKS 263


>GSVIVT01000223001 assembled CDS
          Length = 305

 Score =  313 bits (803), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 156/275 (56%), Positives = 191/275 (69%), Gaps = 36/275 (13%)

Query: 1   MASNIGMMDSAYFVGRNEILTWINNRLQLNLTRIEEAASGAVQCQMMDMTYPGVVPMHKV 60
           MA+NIGMMDSAYFVGR+EIL+WIN+ LQLNL+++EEA SGAV CQ+MD  +PG+VPMHKV
Sbjct: 1   MATNIGMMDSAYFVGRSEILSWINSTLQLNLSKVEEACSGAVHCQLMDSVHPGIVPMHKV 60

Query: 61  NFDAKTEYDMIQNYKVLQEVFNKLKIEKHIEVNRLVKGRPLDNLEFLQWLKRYCDSINGG 120
           NFDAK EY+MIQNYKVLQ+VFNKL+I KHIEV++LVKGRPLDNLEF+QW+KRYCDS+NGG
Sbjct: 61  NFDAKNEYEMIQNYKVLQDVFNKLRITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNGG 120

Query: 121 IMNENYNPVERR--IKGGKDRNSKGCPKTSKSLQSNIMHNSASGEPVGLSKTSGPKPXXX 178
           ++N +YNP+ERR   KGGK+ + K                    +P   S T+ PK    
Sbjct: 121 LLN-SYNPLERREASKGGKEASKK------------------PSQPSAKSSTAAPKAQPS 161

Query: 179 XXXXXXXXXXXEIETLS---------------KEITDLKLSVDHLEKERDFYFAKLRDIE 223
                          LS               ++IT+LKLS+D LEKERDFYFAKLRDIE
Sbjct: 162 HNARKNDASSASTTNLSVKVSRPGSSGGPAYDEKITELKLSIDSLEKERDFYFAKLRDIE 221

Query: 224 ILCQTPELEDIPMAVAIKKILYAADAKESALEEAQ 258
           ILCQ PE+E + +  AIK+ILYA D   S + EAQ
Sbjct: 222 ILCQCPEIEHLTVVGAIKRILYATDDNASVVAEAQ 256