Jatropha Genome Database

JcCA0076441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076441.10 + phase: 0 
         (219 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038219001 assembled CDS                                       188   1e-48
GSVIVT01004003001 assembled CDS                                       182   1e-46

>GSVIVT01038219001 assembled CDS
          Length = 482

 Score =  188 bits (478), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 101/156 (64%), Positives = 110/156 (70%), Gaps = 4/156 (2%)

Query: 49  KLVVSATAADN----HNNXXXXXXXXXXXXXXXXRRHTISVFVGDESGMINRIAGVFARR 104
           KLVVSA++A+N    ++                 RRHTISVFVGDESGMINRIAGVFARR
Sbjct: 42  KLVVSASSAENGVGFNDKTAAVANPAPSAARSKVRRHTISVFVGDESGMINRIAGVFARR 101

Query: 105 GYNIESLAVGLNKDKALFTIVVSGTXXXXXXXXXXXXXXXXXXXXXDLSSEPQVERELML 164
           GYNI+SLAVGLNKDKALFTIVVSGT                     D+S+EP VERELML
Sbjct: 102 GYNIDSLAVGLNKDKALFTIVVSGTERVLQQVVEQLHKLVNVLKVEDISTEPHVERELML 161

Query: 165 IKVNADPNYRAEIKWLVEIFRAKIVDISEHSVTIEV 200
           IKVNA+P YRAEI WLV IFRAKIVDISEHSVTIEV
Sbjct: 162 IKVNANPQYRAEIMWLVNIFRAKIVDISEHSVTIEV 197



 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 72/124 (58%), Gaps = 2/124 (1%)

Query: 79  RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVSGTXXXXXXX 136
           R HT+S+ V +  G++N + GVFARRGYNI+SLAVG  + + L   T VV GT       
Sbjct: 309 RSHTLSMVVNNAPGVLNLVTGVFARRGYNIQSLAVGHAEVEGLSRITTVVPGTDESINKL 368

Query: 137 XXXXXXXXXXXXXXDLSSEPQVERELMLIKVNADPNYRAEIKWLVEIFRAKIVDISEHSV 196
                         D++  P  ERELMLIK+  +   R ++  +  IFRAK +D+S+H++
Sbjct: 369 VQQLKKLIDLHDVRDITHLPFAERELMLIKIAVNAAARRDVLDIASIFRAKAIDVSDHTI 428

Query: 197 TIEV 200
           T+E+
Sbjct: 429 TLEL 432


>GSVIVT01004003001 assembled CDS
          Length = 476

 Score =  182 bits (461), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/122 (74%), Positives = 98/122 (80%)

Query: 79  RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVSGTXXXXXXXXX 138
           +RHTISVFVGDESG+INRIAGVFARRGYNIESLAVGLN+DKALFTIVVSGT         
Sbjct: 72  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVSGTETVLRQVVE 131

Query: 139 XXXXXXXXXXXXDLSSEPQVERELMLIKVNADPNYRAEIKWLVEIFRAKIVDISEHSVTI 198
                       DLS EPQVERELMLIK+NADP+ RAEI WLV+IFRAKIVDISEHS+TI
Sbjct: 132 QLNKLVNVLKVKDLSREPQVERELMLIKLNADPSKRAEIMWLVDIFRAKIVDISEHSLTI 191

Query: 199 EV 200
           EV
Sbjct: 192 EV 193



 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 2/124 (1%)

Query: 79  RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK--DKALFTIVVSGTXXXXXXX 136
           R HT+S+ V D  G++N + GV +RR YNI+SLAVG  +   ++  T VV GT       
Sbjct: 305 RSHTLSMLVNDTPGVLNIVTGVISRRSYNIQSLAVGPAEMEGRSHITTVVPGTDESISKL 364

Query: 137 XXXXXXXXXXXXXXDLSSEPQVERELMLIKVNADPNYRAEIKWLVEIFRAKIVDISEHSV 196
                         D++  P  ERELMLIK+  +   R ++  +  IFRAK VD+S+H++
Sbjct: 365 VQQLQKLIDLHEVRDITHMPFAERELMLIKIAVNTAARRDVLDIASIFRAKAVDVSDHTI 424

Query: 197 TIEV 200
           T+E+
Sbjct: 425 TLEL 428