Jatropha Genome Database

JcCA0076141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076141.10 + phase: 2 /pseudo/partial
         (378 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036611001 assembled CDS                                       336   1e-92
GSVIVT01036631001 assembled CDS                                       333   5e-92

>GSVIVT01036611001 assembled CDS
          Length = 613

 Score =  336 bits (861), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 155/193 (80%), Positives = 167/193 (86%)

Query: 186 FTEFFCNPVSLTLAPTKWHKFTATLMVVLNTFDAQPLSXXXXXXXXXXXXXXTFNIKYLT 245
             E FCNP S++LAPTKW KFT+ LMVVLNTF+AQPLS              TF+IKYLT
Sbjct: 231 LQEHFCNPASISLAPTKWQKFTSNLMVVLNTFEAQPLSDEEGNANNLEEEAATFSIKYLT 290

Query: 246 SSKLMGLELKDPSFRRHILVQCLILFDYLKAPGKNDKDLTSESMKEEIKTCEERVKKLLE 305
           SSKLMGLELKDPSFRRHILVQCLILFDYLKAPGKNDKDL S+SMKEEIK+CEERVKKLLE
Sbjct: 291 SSKLMGLELKDPSFRRHILVQCLILFDYLKAPGKNDKDLPSDSMKEEIKSCEERVKKLLE 350

Query: 306 MTPPKGKDFLHMVEHILEREKNWVWWKRDGCPAFEKQPIENKMVQDGVKKRKPRWRLGNK 365
           MTPPKGK+FLH +EHILEREKNWVWWKRDGCP FE+QPIE K VQDG KKR+PRWR+GNK
Sbjct: 351 MTPPKGKEFLHNIEHILEREKNWVWWKRDGCPPFERQPIEKKAVQDGAKKRRPRWRMGNK 410

Query: 366 ELSQLWKWADQNP 378
           ELSQLWKWADQNP
Sbjct: 411 ELSQLWKWADQNP 423


>GSVIVT01036631001 assembled CDS
          Length = 613

 Score =  333 bits (855), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 154/193 (79%), Positives = 166/193 (86%)

Query: 186 FTEFFCNPVSLTLAPTKWHKFTATLMVVLNTFDAQPLSXXXXXXXXXXXXXXTFNIKYLT 245
             E FCNP S++LAPTKW KFT+ LMVVLNTF+AQPLS              TF+IKYLT
Sbjct: 231 LQEHFCNPASISLAPTKWQKFTSNLMVVLNTFEAQPLSDEEGNANNLEEEAATFSIKYLT 290

Query: 246 SSKLMGLELKDPSFRRHILVQCLILFDYLKAPGKNDKDLTSESMKEEIKTCEERVKKLLE 305
           SSKLMGLELKDPSFRRHILVQCLILFDYLKAPGKNDKDL S+SMKEEIK+CEERVKKLLE
Sbjct: 291 SSKLMGLELKDPSFRRHILVQCLILFDYLKAPGKNDKDLPSDSMKEEIKSCEERVKKLLE 350

Query: 306 MTPPKGKDFLHMVEHILEREKNWVWWKRDGCPAFEKQPIENKMVQDGVKKRKPRWRLGNK 365
            TPPKGK+FLH +EHILEREKNWVWWKRDGCP FE+QPIE K VQDG KKR+PRWR+GNK
Sbjct: 351 TTPPKGKEFLHNIEHILEREKNWVWWKRDGCPPFERQPIEKKAVQDGAKKRRPRWRMGNK 410

Query: 366 ELSQLWKWADQNP 378
           ELSQLWKWADQNP
Sbjct: 411 ELSQLWKWADQNP 423