Jatropha Genome Database

JcCA0076121.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076121.30 - phase: 2 /pseudo/partial
         (287 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031554001 assembled CDS                                       163   1e-40

>GSVIVT01031554001 assembled CDS
          Length = 314

 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/249 (43%), Positives = 145/249 (58%), Gaps = 33/249 (13%)

Query: 47  RKRRMLSEEVEKLQG----QLFLSSKDDKNDQVTSGEMIGDSLRRTTRKRSQEARTDLEG 102
           +K + LSEE+E+L+      L  SSK DKN+   +G++       +T   +Q  R D   
Sbjct: 89  QKNKELSEEIERLRNLQRVGLCYSSKIDKNE---NGQL-------STPGVAQVGRVD--- 135

Query: 103 IVTPNQSDHHDLLVXXXXXXXXXXXXEMDAVSTPGQSYQDDL-LVRELAEGSSRGTMSGA 161
             T N S     +             E +  S+   S Q  L   RE A+  S+ T+S  
Sbjct: 136 --TSNAS----AISMARKRRRRSGPEEKEGASSQSVSGQVVLSRERESAKDLSKETLSSG 189

Query: 162 NLENVKQVILQPEFCRRTVQISANN----SSTNCQFQALIEYLLGMKFSTVIQSDDRICI 217
            L +V+Q       CRR +  S ++    S  +C FQAL+E+L+GMK S V + D + CI
Sbjct: 190 ILVDVQQAGC----CRRNIDSSGDDINDTSPASCLFQALVEFLVGMKLSAVREPDGK-CI 244

Query: 218 SALHQSSGYSFILTWVDKDSAKEPELLYRASTLGTFERVAPEWMRSVLMFSTSMCPIFFE 277
           SALHQSSGYSF LTWV+K + +E ELLYR  +LGTFERVAP WMR VLMFST+MCP+FFE
Sbjct: 245 SALHQSSGYSFSLTWVNKAAGEEMELLYRVQSLGTFERVAPGWMRDVLMFSTNMCPVFFE 304

Query: 278 RIARVIKMH 286
           R++RVIK+H
Sbjct: 305 RVSRVIKLH 313