Jatropha Genome Database

JcCA0076121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076121.10 + phase: 0 /pseudo/partial
         (145 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031548001 assembled CDS                                       114   2e-26

>GSVIVT01031548001 assembled CDS
          Length = 392

 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 57/70 (81%)

Query: 76  LYEARANTGIDRMKIINSVAKSVPGPHKVDLSNPXXXXXXXXXXXXCLIGVVEKYKELAK 135
           LYEAR+NTGIDRMKIINSVAKSVPGPHKVDLSNP            CLIG +EKYKELAK
Sbjct: 323 LYEARSNTGIDRMKIINSVAKSVPGPHKVDLSNPDMTIVVQIVKTVCLIGFLEKYKELAK 382

Query: 136 YNMRQLTSPK 145
           YN+RQLTSPK
Sbjct: 383 YNLRQLTSPK 392