Jatropha Genome Database

JcCA0076041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076041.10 - phase: 0 /partial
         (78 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037466001 assembled CDS                                        96   4e-21

>GSVIVT01037466001 assembled CDS
          Length = 377

 Score = 95.5 bits (236), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 58/78 (74%)

Query: 1   MDVXXXXXXXXXXXXXXINLDNIEIESLYPDEMGPHAMSVEKFLGSGIALLDNNIQERVK 60
           MDV              +NLD+++IESLYP+EMGP+ MS+E FL SG+ LLDN+IQERV+
Sbjct: 235 MDVARKALILSRLLGRRVNLDSLKIESLYPEEMGPNMMSLEDFLSSGLLLLDNDIQERVQ 294

Query: 61  KASLNQNVLRYVCVIEGS 78
           KA+L+  VLRYVCVIEGS
Sbjct: 295 KAALDGKVLRYVCVIEGS 312