Jatropha Genome Database

JcCA0075831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075831.10 - phase: 0 
         (235 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007535001 assembled CDS                                       323   3e-89
GSVIVT01019539001 assembled CDS                                       172   9e-44
GSVIVT01018297001 assembled CDS                                       160   3e-40
GSVIVT01016728001 assembled CDS                                        89   2e-18

>GSVIVT01007535001 assembled CDS
          Length = 230

 Score =  323 bits (829), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 170/237 (71%), Positives = 183/237 (77%), Gaps = 9/237 (3%)

Query: 1   MEAVGVVGSGGLCVPASSINRSSTHTTYSLSFVPGNKLGLRSSH--LAAFHSPSHLFSYS 58
           MEA  V+G+      +SS   S T    SL +V   K  LRS H  LAAFHSPS+LFSYS
Sbjct: 1   MEAAAVLGARPSV--SSSYLHSQTQRHCSL-YVVSQKPTLRSDHRRLAAFHSPSNLFSYS 57

Query: 59  PSRPYNAKHRKPTKTHIFLPHLVASLEQVEETYIMVKPDGVQRGLVGEIISRFEXXXXXX 118
           P RP    H + TK  IFLPHLVAS+EQVEETYIMVKPDGVQRGLVGEIISRFE      
Sbjct: 58  PFRP----HARSTKPRIFLPHLVASMEQVEETYIMVKPDGVQRGLVGEIISRFEKKGFKL 113

Query: 119 XXXXXXQCPKELAEEHYKDLKARPFFPKLINYITSGPVVCMAWEGVGVVASARKLIGSTD 178
                 QCPK+LAEEHYKDLK + FFPKLI YITSGPVVCMAWEGVGVVASARKLIGST+
Sbjct: 114 TGLKLFQCPKQLAEEHYKDLKEKSFFPKLIEYITSGPVVCMAWEGVGVVASARKLIGSTN 173

Query: 179 PLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIALWFKEGEICQWTPALASWFRE 235
           PLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREI+LWFKEGE+C+W P  A W RE
Sbjct: 174 PLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREISLWFKEGELCEWAPVQAPWLRE 230


>GSVIVT01019539001 assembled CDS
          Length = 235

 Score =  172 bits (437), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 78/148 (52%), Positives = 100/148 (67%)

Query: 86  QVEETYIMVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKELAEEHYKDLKARPFFP 145
           ++E T+I +KPDGVQRGL+ EI+SRFE               K+ A++HY DLK RPFF 
Sbjct: 84  EMERTFIAIKPDGVQRGLIAEILSRFERKGFKLVAIKIVVPSKDFAQKHYHDLKERPFFN 143

Query: 146 KLINYITSGPVVCMAWEGVGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDS 205
            L ++++SGPVV M WEG GV+   RKLIG+TDP ++EPGTIRGDLAV  GRN++HGSD 
Sbjct: 144 GLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDG 203

Query: 206 PENGKREIALWFKEGEICQWTPALASWF 233
           PE  K EI LWFK  E+  ++     W 
Sbjct: 204 PETAKDEINLWFKPEELVNYSSNAEKWI 231


>GSVIVT01018297001 assembled CDS
          Length = 142

 Score =  160 bits (406), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 76/143 (53%), Positives = 95/143 (66%), Gaps = 1/143 (0%)

Query: 93  MVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKELAEEHYKDLKARPFFPKLINYIT 152
           M+KPDGVQR LVGEII RFE               +  AE+HY+DL ++PFF  L+ YI 
Sbjct: 1   MIKPDGVQRNLVGEIIGRFEKKGFSLKGLKLLSVERGFAEKHYEDLSSKPFFNGLVEYII 60

Query: 153 SGPVVCMAWEGVGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKRE 212
           SGPVV M WEG  VV + RK+IG+T+P  + PGTIRGD AV  GRNV+HGSDS  + ++E
Sbjct: 61  SGPVVAMIWEGKNVVTTGRKIIGATNPSDSAPGTIRGDFAVDIGRNVIHGSDSVGSARKE 120

Query: 213 IALWFKEGEICQWTPALASWFRE 235
           IALWF EG +  W+ +L  W  E
Sbjct: 121 IALWFPEGPVA-WSSSLNHWIYE 142


>GSVIVT01016728001 assembled CDS
          Length = 143

 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 70/130 (53%), Gaps = 3/130 (2%)

Query: 93  MVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKELAEEHYKDLKARPFFPKLINYIT 152
           M+KPDG+      EI +               +  ++ A + Y +  +R FFP L+ Y+T
Sbjct: 1   MIKPDGLSGNYTDEIKNAILESGFIILREMTVRLDEDTAGKFYAEHSSRSFFPALVKYMT 60

Query: 153 SGPVVCMAWEGVGVVASARKLIGSTDPLQAE---PGTIRGDLAVQTGRNVVHGSDSPENG 209
           SGPV+ M  E V  VA  R LIG TD  +A+   P +IR        +N VHGSDSP++ 
Sbjct: 61  SGPVLVMVLEKVNAVADWRALIGPTDAQKAKVTHPHSIRAMCGQDLEKNCVHGSDSPQSA 120

Query: 210 KREIALWFKE 219
           +REI+ +F+E
Sbjct: 121 EREISFFFEE 130