Jatropha Genome Database

JcCA0075511.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075511.20 + phase: 1 /TE
         (566 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018780001 assembled CDS                                       107   2e-23

>GSVIVT01018780001 assembled CDS
          Length = 1567

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 85/174 (48%)

Query: 355 CPIVIHGKEFPRDLMEXPXREFDVILGMDXLSRHHAIVDCAKKRVTLYTAAGEEIIVVGK 414
           C I +  +    DL       +DVILGMD L+ + A++DC ++R+      G E+  VG 
Sbjct: 480 CVITLADRALNVDLRILDMTGYDVILGMDWLAVYRAVIDCHRRRIIFCLPEGFEVCFVGG 539

Query: 415 RRDFLGNVISAMAAKRLIQKGCEAYLVCALHAEKEQSKVQDIPTVCDYPDVFXXXXXXXX 474
           +   L    S    + +++KG   +L C    EK Q  + +IP V  + DVF        
Sbjct: 540 KCVSLPFSQSDPCYQYVLRKGSINFLACLRGKEKAQKDITEIPMVRKFQDVFPDELPGLP 599

Query: 475 XXXXXXFTIDVYPGAAPVSIAPYRMAPAXXXXXXXXXXXXXDKGFIRPSVSPWG 528
                 F+I+VYPG  P+S++PYRMAP               +GFIRPS SPWG
Sbjct: 600 PHREFDFSIEVYPGTDPISVSPYRMAPLELKELKTQLDELLGRGFIRPSTSPWG 653