Jatropha Genome Database

JcCA0075511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075511.10 + phase: 0 /TE
         (1209 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024357001 assembled CDS                                        63   1e-09
GSVIVT01010555001 assembled CDS                                        61   3e-09
GSVIVT01011334001 assembled CDS                                        57   6e-08
GSVIVT01018138001 assembled CDS                                        52   1e-06

>GSVIVT01024357001 assembled CDS
          Length = 851

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 41/59 (69%)

Query: 949  IPEPISFHQANKDLNWVQAMQKELVALEENKTWVLFDLPKGKKPIGSKWVYRVKYKLDG 1007
            I EP SF +A KD +W +AM+KE+  +E+N+TW L + P  K+ IG KW+YRVK   DG
Sbjct: 726  IVEPQSFEEAIKDEDWRKAMEKEIDVIEKNETWQLVEKPIDKEIIGVKWIYRVKCHSDG 784


>GSVIVT01010555001 assembled CDS
          Length = 147

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 1059 LDINNAYLHNFCTEDIYMIPPAGYTKAIPRXVCKLYRSLYGLKQADRQWNRELTKHLGEY 1118
            +D+ NA+L+   +E++YM PP G +    + VC L R+LYGLKQA R W  + +  +   
Sbjct: 1    MDVKNAFLNGDLSEEVYMQPPPGLSVESNK-VCHLRRALYGLKQAPRAWFAKFSSTIFRL 59

Query: 1119 GFQQSQNGQCLFTKGTKSDFLALLLYVD 1146
            G+  S     LF + T    + LLLY +
Sbjct: 60   GYTASPYDSALFLRRTDKGTILLLLYSN 87


>GSVIVT01011334001 assembled CDS
          Length = 640

 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 1/97 (1%)

Query: 1111 LTKHLGEYGFQQSQNGQCLFTKGT-KSDFLALLLYVDDILITGLYEKLIINVKQFLHDKF 1169
             TK +  +G+    +   LF K T K     +++YV DI++T  +E+ I  +K     +F
Sbjct: 14   FTKVVKGFGYSWCHSDHTLFVKHTVKGRTAIIIVYVGDIILTKDHEEEIGKLKSIFAHEF 73

Query: 1170 TNKNIGYAKFFLGLEIAISETAICVTQRKYIMDLVXE 1206
              K++G  K+F G+EI  S   I V+Q KY++DL+ E
Sbjct: 74   EIKDLGNLKYFFGMEITRSNMGIVVSQCKYVLDLLTE 110


>GSVIVT01018138001 assembled CDS
          Length = 98

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 53/91 (58%)

Query: 1110 ELTKHLGEYGFQQSQNGQCLFTKGTKSDFLALLLYVDDILITGLYEKLIINVKQFLHDKF 1169
            +L + L  +GF  +++ Q LF + T S    + +YVDDIL+T      I ++   L+ KF
Sbjct: 8    KLHRALLSFGFVSTKSDQSLFLRFTPSHITYVFVYVDDILVTSSDTTAITSLIAQLNSKF 67

Query: 1170 TNKNIGYAKFFLGLEIAISETAICVTQRKYI 1200
            + K++G   +FL ++++ +   + ++Q KYI
Sbjct: 68   SLKDLGEVHYFLVIQVSYTNNGLHLSQTKYI 98