Jatropha Genome Database

JcCA0075421.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075421.20 - phase: 0 /pseudo
         (638 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009901001 assembled CDS                                       159   4e-39

>GSVIVT01009901001 assembled CDS
          Length = 686

 Score =  159 bits (402), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 128/302 (42%), Positives = 160/302 (52%), Gaps = 28/302 (9%)

Query: 200 EQKPPCNSVNFCVPPGPHQDTNGLDQAVKLEISLLDRKPEIALGQSMTIGSQLDQHHTIS 259
           ++K    SV F VP     DT GL +  + E  + + KPEI            +Q HTI 
Sbjct: 312 DEKLVLRSVKFDVPYEQSLDT-GLMKLKQQEAPIPETKPEI------------EQQHTIK 358

Query: 260 ESKNNGPALWPGLSSTVST-TASHG-PLSQSCAVKVPAWLGSRPG------FLQNXXXXX 311
           +S+ N   LWPGLSST S  TA HG PL  S   K  AWL +  G      F        
Sbjct: 359 DSRKNDLVLWPGLSSTGSIGTAIHGLPLHSSA--KTQAWLDNATGTTGPSSFGNGVSTEK 416

Query: 312 XXXXXXTDRRSWKRCAAHGYISHLIRALQTSDGKESLPVPQNQLRPHEILKQGVLMTIND 371
                   ++ WKRCAAH  IS LI+ LQ S+ KE L +  NQLR  E  KQ   +  N+
Sbjct: 417 VSRVMVHKKQPWKRCAAHVRISRLIQDLQNSERKERLSMQPNQLRTDEGSKQVGSLAGNN 476

Query: 372 FNRSRTDLSGITSAASTIVNPVEKNSNDNKIGILQHLRPHQDNSPAALASGMYTSHKQSF 431
            +  R  L+G+ SA S   + VE NS + +  IL     HQD   A  ASG YTS KQS+
Sbjct: 477 PSGLRNGLNGVVSANSIGGSAVENNSTEARKDILLQQGLHQDQQQAP-ASGTYTSQKQSY 535

Query: 432 NFLSLTAGGGGMEPNSSFNGVGNTLEPLAQLQVPY---HAQHPTLVPFSMSQTRYT-SAY 487
           +FLSL+AGGGG+E N+S N   N  EP +QL VPY     QH TL+PFS+ QTRY+ S Y
Sbjct: 536 DFLSLSAGGGGVEANNSSNRAVNDPEPSSQLHVPYLHPLPQHHTLIPFSLHQTRYSASPY 595

Query: 488 TD 489
            D
Sbjct: 596 PD 597



 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/128 (56%), Positives = 83/128 (64%), Gaps = 19/128 (14%)

Query: 9   DKSRDVRRGASRFS---RQIKQSGLKLVSALNG------DFLSLEKTTKERIKKLSAVNR 59
           DK RDVRR  SRFS   RQIKQS  KL+S L+G      D +  EK  KER+KKLS V R
Sbjct: 2   DKGRDVRRAQSRFSPAKRQIKQSVHKLLSGLDGCEGRGGDAVFPEKPKKERVKKLSVVGR 61

Query: 60  ETSSKEENYEMGCD-----VADREEVLPSQAPSISGSGASKRFKLPRKQFFDNCNGVAHV 114
             +S  E+ EMGC        + E+ L SQAPS    G+SKRFKLP+K FFD+CNGV H 
Sbjct: 62  -ANSVNEDVEMGCSGTYGSEEEEEQQLRSQAPS---PGSSKRFKLPKK-FFDDCNGVDHS 116

Query: 115 SVPRKLRS 122
           SVPRKLRS
Sbjct: 117 SVPRKLRS 124