Jatropha Genome Database

JcCA0075421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075421.10 + phase: 0 
         (99 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018785001 assembled CDS                                       184   6e-48
GSVIVT01009900001 assembled CDS                                       183   2e-47
GSVIVT01013725001 assembled CDS                                       115   3e-27
GSVIVT01028912001 assembled CDS                                       115   5e-27
GSVIVT01015270001 assembled CDS                                        89   4e-19
GSVIVT01018959001 assembled CDS                                        85   8e-18

>GSVIVT01018785001 assembled CDS
          Length = 172

 Score =  184 bits (468), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 90/93 (96%), Positives = 92/93 (98%)

Query: 7   IKFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 66
           ++FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 80  VEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 139

Query: 67  VYLILDEFILAGELQETSKKAIIERMGELEKLE 99
           VYLILDEFILAGELQETSKKAIIERMGELEK E
Sbjct: 140 VYLILDEFILAGELQETSKKAIIERMGELEKQE 172


>GSVIVT01009900001 assembled CDS
          Length = 188

 Score =  183 bits (464), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/93 (95%), Positives = 92/93 (98%)

Query: 7   IKFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 66
           ++FRTHKVIYRRYAGLFFSLCVD+TDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 96  VEFRTHKVIYRRYAGLFFSLCVDMTDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 155

Query: 67  VYLILDEFILAGELQETSKKAIIERMGELEKLE 99
           VYLILDEFILAGELQETSKKAIIERMGELEK E
Sbjct: 156 VYLILDEFILAGELQETSKKAIIERMGELEKQE 188


>GSVIVT01013725001 assembled CDS
          Length = 178

 Score =  115 bits (289), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 67/82 (81%)

Query: 7   IKFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 66
           +++R +KV+Y+RYA L+F +C+D  DNEL  LE IH FVEILD +F +VCELDL+FNFHK
Sbjct: 67  VEWRGYKVVYKRYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHK 126

Query: 67  VYLILDEFILAGELQETSKKAI 88
            Y +LDE ++AGELQE+SKK +
Sbjct: 127 AYYVLDELLIAGELQESSKKTV 148


>GSVIVT01028912001 assembled CDS
          Length = 190

 Score =  115 bits (287), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 67/82 (81%)

Query: 7   IKFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 66
           +++R +KV+Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK
Sbjct: 79  VEWRGYKVVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK 138

Query: 67  VYLILDEFILAGELQETSKKAI 88
            Y ILDE ++AGELQE+SKK +
Sbjct: 139 AYYILDELLIAGELQESSKKTV 160


>GSVIVT01015270001 assembled CDS
          Length = 136

 Score = 89.0 bits (219), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 64/91 (70%)

Query: 7   IKFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 66
           ++ RT+K++YRRYA LFF + VD  +NELA LE IHL VE +D  F NVCELD++F+  K
Sbjct: 44  VEHRTYKIVYRRYASLFFLVGVDNGENELAILEFIHLLVETMDRHFGNVCELDIMFHLEK 103

Query: 67  VYLILDEFILAGELQETSKKAIIERMGELEK 97
            + +L+E ++ G + ETSK  I+  +  ++K
Sbjct: 104 AHFMLEEMVMNGCIVETSKANILAPIQLMDK 134


>GSVIVT01018959001 assembled CDS
          Length = 165

 Score = 84.7 bits (208), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 60/87 (68%)

Query: 13  KVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILD 72
           +++Y+ YA L+F    D ++NELA L+ I + VE LD  F NVCELD+VFN+ K++ ILD
Sbjct: 61  RLVYKHYATLYFVFVFDSSENELAMLDLIQVLVETLDKCFKNVCELDIVFNYSKLHTILD 120

Query: 73  EFILAGELQETSKKAIIERMGELEKLE 99
           E I  G++ ETS   +++ + E+ +LE
Sbjct: 121 EIIFGGQVLETSSAEVMKAVEEISRLE 147