Jatropha Genome Database

JcCA0075411.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075411.40 - phase: 2 /partial
         (59 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011384001 assembled CDS                                        84   2e-17
GSVIVT01008028001 assembled CDS                                        84   2e-17
GSVIVT01020020001 assembled CDS                                        79   5e-16

>GSVIVT01011384001 assembled CDS
          Length = 197

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/42 (92%), Positives = 41/42 (97%)

Query: 1   VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 42
           VGRQVVNIPSF+VR+DSQKHIDFSLTSP GGGRPGRVKRKNQ
Sbjct: 138 VGRQVVNIPSFLVRMDSQKHIDFSLTSPLGGGRPGRVKRKNQ 179


>GSVIVT01008028001 assembled CDS
          Length = 197

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/42 (92%), Positives = 41/42 (97%)

Query: 1   VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 42
           VGRQVVNIPSF+VR+DSQKHIDFSLTSP GGGRPGRVKRKNQ
Sbjct: 138 VGRQVVNIPSFLVRMDSQKHIDFSLTSPLGGGRPGRVKRKNQ 179


>GSVIVT01020020001 assembled CDS
          Length = 197

 Score = 78.6 bits (192), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/41 (90%), Positives = 39/41 (95%)

Query: 1   VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKN 41
           VGRQVVNIPSFMVRV+SQKHIDF+ TSP GGGRPGRVKRKN
Sbjct: 138 VGRQVVNIPSFMVRVESQKHIDFANTSPLGGGRPGRVKRKN 178