Jatropha Genome Database

JcCA0075411.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075411.20 + phase: 0 
         (92 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008030001 assembled CDS                                        96   4e-21
GSVIVT01008034001 assembled CDS                                        74   1e-14
GSVIVT01020027001 assembled CDS                                        74   1e-14
GSVIVT01011380001 assembled CDS                                        74   2e-14

>GSVIVT01008030001 assembled CDS
          Length = 90

 Score = 95.5 bits (236), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 64/79 (81%), Gaps = 2/79 (2%)

Query: 13 KITKNEIIDLILKLQALLPHINQRQDSR-VSASKILKETCSYIGKLQREVDDLSEKLSQM 71
          ++T +EI DLILKLQALLPH NQR+ S   SA +ILKETCSYI +L REV DLSE+LSQ+
Sbjct: 10 RVTDDEINDLILKLQALLPHSNQRRTSTGASAWRILKETCSYIKRLHREVGDLSERLSQL 69

Query: 72 LDSMD-ISNVDVESLISIL 89
          LDS+D I+ V+VE L S+L
Sbjct: 70 LDSLDNINGVEVEQLRSLL 88


>GSVIVT01008034001 assembled CDS
          Length = 91

 Score = 73.9 bits (180), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 48/63 (76%)

Query: 14 ITKNEIIDLILKLQALLPHINQRQDSRVSASKILKETCSYIGKLQREVDDLSEKLSQMLD 73
          IT ++I DL+ KLQ LLP I  R   +VSA+K+L+ETC+YI  L REVDDLSE+LS++L 
Sbjct: 16 ITDDQINDLVSKLQQLLPEIRGRHSDKVSAAKVLQETCNYIRSLNREVDDLSERLSELLA 75

Query: 74 SMD 76
          + D
Sbjct: 76 TTD 78


>GSVIVT01020027001 assembled CDS
          Length = 92

 Score = 73.9 bits (180), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 57/78 (73%), Gaps = 1/78 (1%)

Query: 13 KITKNEIIDLILKLQALLPHINQRQDSRVSASKILKETCSYIGKLQREVDDLSEKLSQML 72
          +I+ ++I DL+ KLQ L+P I  R+  +VSASK+L+ETC+YI  L REVDDLS++LS +L
Sbjct: 15 RISDDQIADLVSKLQQLIPEIRNRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLSALL 74

Query: 73 DSMDISNVDVESLISILL 90
           S D ++ D  ++I  LL
Sbjct: 75 ASTD-TDSDQAAIIRSLL 91


>GSVIVT01011380001 assembled CDS
          Length = 90

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 49/60 (81%)

Query: 17 NEIIDLILKLQALLPHINQRQDSRVSASKILKETCSYIGKLQREVDDLSEKLSQMLDSMD 76
          ++II+L+ KLQ LLP I  R+  +VSASK+L+ETC+YI  L REVDDLSE+LS++L ++D
Sbjct: 17 DQIIELVSKLQQLLPEIRNRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSRLLATVD 76