Jatropha Genome Database

JcCA0075411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075411.10 + phase: 0 
         (679 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008031001 assembled CDS                                       506   e-143
GSVIVT01008515001 assembled CDS                                       376   e-104

>GSVIVT01008031001 assembled CDS
          Length = 606

 Score =  506 bits (1302), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/460 (59%), Positives = 322/460 (70%), Gaps = 59/460 (12%)

Query: 12  KTALKLDNLVGDIEDAVSSAMSKKLRKPSSTQNSEEMRLLAIETLRKTESFLTSITKAHP 71
           +TALKLD+LVGDIEDAVSS M++ L+K +ST +SEEMRL A++ L+ TE  LTS+TK  P
Sbjct: 130 ETALKLDSLVGDIEDAVSSTMNRNLKKHASTHSSEEMRLHALKALKLTEDVLTSVTKTRP 189

Query: 72  QWTHLVLAVDHRVDRALAILRPQAIADHRALLTSLGWPPPLSTLTSSNLDTGKSTEVPSP 131
           QW  LV AVD RVDRALAILRPQAIADHR LL SLGWPPPLSTL +SNLDT KS+EV +P
Sbjct: 190 QWARLVSAVDQRVDRALAILRPQAIADHRTLLASLGWPPPLSTL-NSNLDTRKSSEVLNP 248

Query: 132 LFTMQGDLKNQYCENFLALCHLQELQRRRKSRQLEGHNTEVALHQPLWAIEELVNPISVA 191
           LFTMQGDLK+QYCENFL+LC LQELQRRRK RQLEG+  E+ALHQPLW IEELVNPIS+A
Sbjct: 249 LFTMQGDLKHQYCENFLSLCSLQELQRRRKYRQLEGYYREIALHQPLWVIEELVNPISLA 308

Query: 192 CQRHFSKWINKLEFIFALVYKITSDYVDTMDELL-QPLVDEARLVGYSCREEWISAMVTS 250
            QRHFSKWI+K EFIFALVYK+T DYVD+MDE+    LVD   ++ +  R       V S
Sbjct: 309 FQRHFSKWIDKPEFIFALVYKVTRDYVDSMDEIAWLHLVD--LMITFDKR-------VQS 359

Query: 251 LSTYLAKEVFTIYVGQLDEESVAGVQSQGISWLHLIDLMIAFDKRIQSLMSHSGIMASLQ 310
           +  +    VF    G L + S   V      WL L                     A ++
Sbjct: 360 MLAHSGLLVFLQEDGNLQKISSLSVFCDRPDWLDL--------------------WAKIE 399

Query: 311 EDENLQKISSLSIFCDRPDWLDLWAEIELSDIVEKLKPEVDDDRNWTMKIEGTALLSGPE 370
            D+ L K                            LK E++D +NWTMK++G  LL GPE
Sbjct: 400 LDDVLDK----------------------------LKLEMEDRKNWTMKVQGAVLLPGPE 431

Query: 371 NYKSPVVSVAFLRRISLLVDRCRSLPTISLRSRFLRLAGAPVIRRFLDFALLRCQEAEGL 430
           +Y+SP +S  FL+R+S +VDRCR+LP++SL SRF RL+GAP+I +FLD  LLRCQEAEGL
Sbjct: 432 DYRSPAISSVFLQRLSAVVDRCRALPSVSLSSRFARLSGAPIIHKFLDCILLRCQEAEGL 491

Query: 431 TALTDDDALIKVANSINAARYFESVLKEWCEDIFFLEMGF 470
           TALTDDDALIKV NSINAARYFESVLKEWCED+FFLEMG 
Sbjct: 492 TALTDDDALIKVTNSINAARYFESVLKEWCEDVFFLEMGL 531


>GSVIVT01008515001 assembled CDS
          Length = 1659

 Score =  376 bits (966), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 223/645 (34%), Positives = 366/645 (56%), Gaps = 64/645 (9%)

Query: 12  KTALKLDNLVGDIEDAVSSAMSKKLRKPSSTQNSEEMRLLAIETLRKTESFLTSITKAHP 71
           +TAL+L+ L+GD+ED + +       K       +E  + A++ +   +S L ++ +  P
Sbjct: 119 ETALRLEALIGDLEDVIFTENVAGTVK-------QERVIGAVKIVADIDSVLANVAEFQP 171

Query: 72  QWTHLVLAVDHRVDRALAILRPQAIADHRALLTSLGWPPPLSTLTSSNLDTGKSTEVPSP 131
           +W  L+ +VD RV++AL+ILR + +A HR LL+SLGWPP LS    S ++ G  + +P+P
Sbjct: 172 RWRRLLNSVDDRVEKALSILRTRVVASHRTLLSSLGWPPKLSV---SKIENGGVSAIPNP 228

Query: 132 LFTMQGDLKNQYCENFLALCHLQELQRRRKSRQLEGHNTEVALHQPLWAIEELVNPISVA 191
           L  M+G+ +  Y ++F+ALC LQ ++ +R+      H+ ++     LWAI+ELV+PI+  
Sbjct: 229 LMLMRGEKRESYSQSFVALCALQHVREKRR------HSDDLGFKAKLWAIDELVSPIASR 282

Query: 192 CQRHFSKWINKLEFIFALVYKITSDYVDTMDELLQPLVDEARLVGYSCREEWISAMVTSL 251
            + HFSKW+++ EFIFALV KITSD+   ++E+LQPL+DEARLVG S +E W+SAMV  L
Sbjct: 283 IEYHFSKWVDQPEFIFALVRKITSDFAVGVEEVLQPLIDEARLVGCSAKEAWVSAMVQML 342

Query: 252 STYLAKEVFTIYVGQLDEESVAGVQSQGISWLHLIDLMIAFDKRIQSLM-SHSGIMASLQ 310
           S +L   VF++   +  E+        G SWLHLIDL++AF+K++QSL+ S S ++AS  
Sbjct: 343 SGFLGHRVFSVLAQRYKEKEKK--LEVGSSWLHLIDLIVAFNKQMQSLVNSESYLLAS-- 398

Query: 311 EDENLQKISSLSIFCDRPDWLDLWAEIELSDIVEKLKPEVDDDRNWTMKIEGTALLSGPE 370
                                    E++ + +VE  K  VD     T K     LLS  E
Sbjct: 399 -------------------------ELDRAWLVES-KKGVD---VLTNKETERFLLSTRE 429

Query: 371 NYKSPVVSVAFLRRISLLVDRCRSLPTISLRSRFLRLAGAPVIRRFLDFALLRCQEAEGL 430
           ++++PV++ + L+    ++DR ++LP I  R +F+R   A  +  FL+  LLR +  +  
Sbjct: 430 DHRAPVIAESALKMAWEMIDRGQTLPAILPRIQFIRSTAARFLWYFLNVLLLRWKGTDLS 489

Query: 431 TALTDDDALIKVANSINAARYFESVLKEWCEDIFFLEMGFDHGDQLGISITNNEAREEPV 490
               DD+ L++    INAA Y E  L++W +D+ FLEM     +       N        
Sbjct: 490 PENPDDETLMRACGLINAAGYCEFKLQQWSDDVNFLEMKMAETESKNPVKDNTNDH---- 545

Query: 491 SGIFDEEIRKLEEFRKEWVEKISVVILRGFDARCRDYVKNRRQWQEKGEE---------- 540
           S  FDEEI+ L+E    W+ +I   +LR F+    +Y++N + + ++             
Sbjct: 546 SCFFDEEIKSLDELETNWLMEIVANLLRQFELLSWEYMENLKHFDQEQNRFCPTTTSAAM 605

Query: 541 GWTVSKNLVGALDHLQGKMAIMEENLNAMDFVGVWRSLAAGVDRLLFNGVLMSNVKFHDC 600
              +S +L+ ALD L+ ++ ++E +LN  DF+ +WRS+A G+D  +F+ +   ++ F + 
Sbjct: 606 DLAISHDLIEALDALRSQLLVIERSLNPRDFLDLWRSVAEGLDHFIFSSIFGIDIGFSEE 665

Query: 601 GIERFNNDMEVLFGVFGAWCLRPEGFFPKVSDGMKLLKMGEEQLR 645
           G+ +   DM  LF VF  +C RPE FFP + D ++LL+M + +++
Sbjct: 666 GVNQIGADMRALFSVFQPFCARPEAFFPCIRDSLRLLEMDKGEVK 710