Jatropha Genome Database

JcCA0075381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075381.10 + phase: 0 
         (359 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035912001 assembled CDS                                       392   e-109
GSVIVT01029247001 assembled CDS                                       341   3e-94
GSVIVT01033422001 assembled CDS                                       120   1e-27
GSVIVT01011187001 assembled CDS                                        61   8e-10

>GSVIVT01035912001 assembled CDS
          Length = 398

 Score =  392 bits (1006), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/319 (61%), Positives = 233/319 (73%), Gaps = 8/319 (2%)

Query: 28  NDNGTVAATSKNDYPSNPKDGDIWSSFKWSSIHHHFNPLYQFSRPHXXXXXXXXXXXXXL 87
           +    +  +S+  YPS P+D +         +       Y FSRPH             L
Sbjct: 50  HKRNPIHVSSEYGYPSKPEDQN--------HVSKQLRAFYLFSRPHTIIGTVIGITSVSL 101

Query: 88  LPVETITELSPTFFMGLLKALVPSVLMNIYVVGLNQLFDIEIDKVNKPYLPLASGNFSKE 147
           LP+ETI++LSP FF+GLLKA+VPSVLMNIYVVGLNQ+FD+EIDKVNKP LPLASG+FS E
Sbjct: 102 LPLETISDLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSME 161

Query: 148 IGITIVSISLFMSLGMGIMFESPPVVAALLISFVLGSVYSVELPFMRWKKQAFLAATCIL 207
            G  IV ISL MS+GMGIMF+SPP+  ALLISF+LG+ YS+E+P +RWK+   LAA+CIL
Sbjct: 162 TGSQIVFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCIL 221

Query: 208 IVRAIVVQLAFFAHMQKFVLGKPIVITKSLVFAVAFMCFFSAVIALFKDIPDVDGDRDFG 267
           IVRAIVVQLAFFAH+QK VLG+ IV TKS+VF VAFMCFFS VIALFKDIPDVDGDR+FG
Sbjct: 222 IVRAIVVQLAFFAHIQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFG 281

Query: 268 IRSFSVSLGQERVFWLCVNMXXXXXXXXXXXXXSCSLGPSKLITMLGHCTLALVLWMQAQ 327
           I+SF+V LGQ++VFWLCVNM             S S  P K  T+  HC LALVLW++AQ
Sbjct: 282 IQSFTVKLGQKKVFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQ 341

Query: 328 SVDLSSNNSITCFYMFIWK 346
           SVDLSS  ++T FYMFIWK
Sbjct: 342 SVDLSSKEAVTSFYMFIWK 360


>GSVIVT01029247001 assembled CDS
          Length = 406

 Score =  341 bits (874), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 172/332 (51%), Positives = 224/332 (67%), Gaps = 2/332 (0%)

Query: 28  NDNGTVAATSKNDYPSNPKDGDIWSSFKWSSIHHHFNPLYQFSRPHXXXXXXXXXXXXXL 87
           N    V A S     S P      S+   + + +  +  Y+FSRPH             L
Sbjct: 77  NTKCVVNAASGQPLESEPGASSPKSTL--TPVKNALDAFYRFSRPHTVIGTALSIISVSL 134

Query: 88  LPVETITELSPTFFMGLLKALVPSVLMNIYVVGLNQLFDIEIDKVNKPYLPLASGNFSKE 147
           L VE +++ SP FF G+L+A+V ++LMNIY+VGLNQ+ DIEIDKVNKPYLPLASG +S  
Sbjct: 135 LAVEKLSDFSPLFFTGVLEAVVAALLMNIYIVGLNQISDIEIDKVNKPYLPLASGEYSVG 194

Query: 148 IGITIVSISLFMSLGMGIMFESPPVVAALLISFVLGSVYSVELPFMRWKKQAFLAATCIL 207
            G+ IV+   FMS  +G +  S P+  AL +SFVLG+ YS++LP +RWK+ A +AA CIL
Sbjct: 195 TGVGIVTSFAFMSFLVGWIVGSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAAMCIL 254

Query: 208 IVRAIVVQLAFFAHMQKFVLGKPIVITKSLVFAVAFMCFFSAVIALFKDIPDVDGDRDFG 267
            VRA++VQ+AF+ H+Q FV G+P V ++ L+FA AFM FFS VIALFKDIPD++GDR FG
Sbjct: 255 AVRAVIVQIAFYMHVQTFVYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDRIFG 314

Query: 268 IRSFSVSLGQERVFWLCVNMXXXXXXXXXXXXXSCSLGPSKLITMLGHCTLALVLWMQAQ 327
           IRSFSV LGQ+RVFW+C+ +             + S   SKL+T+LGH  LA +LW +A+
Sbjct: 315 IRSFSVRLGQKRVFWICILLLQMAYGAAVSVGATSSCLWSKLVTVLGHAVLASILWTRAK 374

Query: 328 SVDLSSNNSITCFYMFIWKLFYAEYFLIPFVR 359
           SVDL S  +IT FYMFIW+LFYAEYFLIP VR
Sbjct: 375 SVDLKSKAAITSFYMFIWQLFYAEYFLIPLVR 406


>GSVIVT01033422001 assembled CDS
          Length = 390

 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 129/250 (51%), Gaps = 13/250 (5%)

Query: 115 NIYVVGLNQLFDIEIDKVNKPYLPLASGNFSKEIGITIVSISLFMSLG----MGIMFESP 170
           N Y+VG+NQ++DI IDKVNKPYLP+A+G+ S +    +V   LF ++     +G  F S 
Sbjct: 148 NGYIVGINQIYDISIDKVNKPYLPIAAGDLSVQSAWFLV---LFFAVAGVLIVGSNFGS- 203

Query: 171 PVVAALLISFVLGSVYSVELPFMRWKKQAFLAATCILIVRAIVVQLAFFAHMQKFVLGKP 230
            + +   +  VLG++YSV  P  R K+    A   I  VR  ++    + +  +  LG P
Sbjct: 204 FITSLYCLGLVLGTIYSV--PPFRMKRFPVAAFLIIATVRGFLLNFGVY-YATRAALGLP 260

Query: 231 IVITKSLVFAVAFMCFFSAVIALFKDIPDVDGDRDFGIRSFSVSLGQERVFWLCVNMXXX 290
            + +  +VF   F+  F+ VIA+ KD+PDV+GDR + I + +  LG   + +L   +   
Sbjct: 261 FMWSAPVVFITTFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLLV 320

Query: 291 XXXXXXXXXXSCSLGPSKLITMLGHCTLALVLWMQAQSVDLS--SNNSITCFYMFIWKLF 348
                              + +  H  LA  L  QA+ ++ +  +  +I+ FY FIW LF
Sbjct: 321 NYIGSILAAIYMPQAFRLSLMIPAHAILAAGLIFQARVLEQANYTKEAISDFYRFIWNLF 380

Query: 349 YAEYFLIPFV 358
           Y EY + PF+
Sbjct: 381 YVEYIIFPFI 390


>GSVIVT01011187001 assembled CDS
          Length = 370

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 16/176 (9%)

Query: 117 YVVGLNQLFDIEIDKVNKPYLPLASGNFSKEIGITIV------SISLFMSLGMGIMFESP 170
           Y   LN  +D EID +N+PY P+ SG  S+   IT +       + L   L +    + P
Sbjct: 133 YTQTLNDWYDREIDAINEPYRPIPSGAISENEVITQIWLLLLGGLGLAGLLDVWAGHDFP 192

Query: 171 PVVAALLISFVLGSVYSVELPFMRWKKQAFLAATCILIVRAIVVQLAFFAHMQKFVLGKP 230
            V    L   +L  +YS   P ++ K+  ++       + A  + L ++A    F    P
Sbjct: 193 IVFYLALGGSLLSYIYSA--PPLKLKQNGWIGN---FALGASYISLPWWAGQALFGTLNP 247

Query: 231 IVITKSLVFAVAFMCFFSAVIALFKDIPDVDGDRDFGIRSFSVSLGQERVFWLCVN 286
            +I  +L++++A +      IA+  D   V+GDR  G++S  V+ G E   W+CV 
Sbjct: 248 DIIVLTLLYSIAGLG-----IAIVNDFKSVEGDRALGLQSLPVAFGAETAKWICVG 298